STRINGSTRING
phoR phoR htpG htpG kdpD kdpD rcsC rcsC yojN yojN ACD09427.1 ACD09427.1 ACD09349.1 ACD09349.1 baeS baeS phoQ phoQ narX narX rstB rstB cheA cheA torS torS evgS evgS ACD07410.1 ACD07410.1 narQ narQ ACD08297.1 ACD08297.1 barA barA qseC qseC parE parE arcB arcB envZ envZ gyrB gyrB uhpB uhpB glnL glnL cpxA cpxA zraS zraS mutL mutL creC creC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
phoRPhosphate regulon sensor protein PhoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR02966. (431 aa)
htpGChaperone protein HtpG; Molecular chaperone. Has ATPase activity. (624 aa)
kdpDSensor protein KdpD; Identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702. (894 aa)
rcsCSensor histidine kinase/response regulator RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (949 aa)
yojNSensor histidine kinase YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (886 aa)
ACD09427.1Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694. (561 aa)
ACD09349.1Heavy metal sensor histidine kinase; Member of a two-component regulatory system. (452 aa)
baeSSensor histidine kinase BaeS; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (467 aa)
phoQSensor histidine kinase PhoQ; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918. (486 aa)
narXNitrate/nitrite sensor protein NarX; Identified by similarity to SP:P0AFA2; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730. (598 aa)
rstBSensor histidine kinase RstB; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (433 aa)
cheAChemotaxis protein CheA; Identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF09078. (654 aa)
torSSensor histidine kinase/response regulator TorS; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR02956. (914 aa)
evgSSensor histidine kinase/response regulator EvgS; Identified by similarity to SP:P30855; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518. (1197 aa)
ACD07410.1Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694. (559 aa)
narQNitrate/nitrite sensor histidine kinase NarQ; Identified by similarity to SP:P27896; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730. (566 aa)
ACD08297.1Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (475 aa)
barASensor histidine kinase/response regulator BarA; Identified by similarity to SP:P0AEC5; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. (918 aa)
qseCSensor histidine kinase QseC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (449 aa)
parEDNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (630 aa)
arcBAerobic respiration control sensor protein ArcB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (778 aa)
envZOsmolarity sensor protein EnvZ; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (450 aa)
gyrBDNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (804 aa)
uhpBSensor histidine kinase UhpB; Identified by match to protein family HMM PF02518; match to protein family HMM PF05231; match to protein family HMM PF07730. (497 aa)
glnLNitrogen regulation protein NR(II); Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518. (349 aa)
cpxASensor histidine kinase CpxA; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (457 aa)
zraSSensor histidine kinase ZraS; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (458 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (615 aa)
creCSensor protein CreC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (474 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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