(29 nodes) Phosphopantetheine attachment site, and AMP-binding enzyme C-terminal domain network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_002670	Polyketide synthase, putative. (2628 aa)
	ACLA_004290	NRPS-like enzyme, putative. (607 aa)
	ACLA_076770	Nonribosomal peptide synthase, putative. (3502 aa)
	ACLA_043230	C6 transcription factor, putative. (630 aa)
	ACLA_043310	Polyketide synthase, putative. (1749 aa)
	ACLA_044390	Nonribosomal peptide synthase, putative. (2511 aa)
	ACLA_044510	NRPS-like enzyme, putative. (996 aa)
	ACLA_055390	PKS-like enzyme, putative. (229 aa)
	ACLA_055790	Polyketide synthase, putative. (2517 aa)
	ACLA_013430	NRPS-like enzyme, putative. (1274 aa)
	ACLA_017140	AMP-binding domain-containing protein. (205 aa)
	ACLA_017150	AMP dependent CoA ligase. (308 aa)
	ACLA_061190	Nonribosomal peptide synthase SidE. (2115 aa)
	ACLA_061310	Polyketide synthase, putative. (2561 aa)
	ACLA_061390	Polyketide synthase, putative. (1914 aa)
	ACLA_063030	Polyketide synthase, putative. (2556 aa)
	ACLA_094600	Polyketide synthase, putative. (2599 aa)
	ACLA_066550	NRPS-like enzyme, putative. (596 aa)
	ACLA_066710	NRPS-like enzyme, putative. (1227 aa)
	ACLA_066880	NRPS-like enzyme, putative. (430 aa)
	ACLA_046130	Coenzyme A synthetase, putative. (512 aa)
	ACLA_038530	Uncharacterized protein. (1126 aa)
	ACLA_042400	Adenylate-forming enzyme, putative. (555 aa)
	ACLA_042410	Polyketide synthase, putative. (2437 aa)
	ACLA_095980	Nonribosomal peptide synthase, putative. (3921 aa)
	ACLA_098920	Polyketide synthase, putative. (2559 aa)
	ACLA_017890	Nonribosomal peptide synthase, putative. (4064 aa)
	ACLA_021860	Nonribosomal peptide synthetase, putative. (1036 aa)
	ACLA_087700	Polyketide synthase, putative. (2444 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_002670	ACLA_013430	A1C588	A1CAZ0	Polyketide synthase, putative.	NRPS-like enzyme, putative.	0.570
ACLA_002670	ACLA_021860	A1C588	A1CPA1	Polyketide synthase, putative.	Nonribosomal peptide synthetase, putative.	0.507
ACLA_002670	ACLA_044390	A1C588	A1C8T2	Polyketide synthase, putative.	Nonribosomal peptide synthase, putative.	0.429
ACLA_002670	ACLA_044510	A1C588	A1C8U4	Polyketide synthase, putative.	NRPS-like enzyme, putative.	0.570
ACLA_002670	ACLA_055390	A1C588	A1C9G7	Polyketide synthase, putative.	PKS-like enzyme, putative.	0.436
ACLA_002670	ACLA_066550	A1C588	A1CGD9	Polyketide synthase, putative.	NRPS-like enzyme, putative.	0.409
ACLA_004290	ACLA_042400	A1C5P7	A1CLJ4	NRPS-like enzyme, putative.	Adenylate-forming enzyme, putative.	0.460
ACLA_004290	ACLA_042410	A1C5P7	A1CLJ5	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.543
ACLA_004290	ACLA_043310	A1C5P7	A1C8H5	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.526
ACLA_004290	ACLA_046130	A1C5P7	A1CGZ3	NRPS-like enzyme, putative.	Coenzyme A synthetase, putative.	0.569
ACLA_004290	ACLA_055390	A1C5P7	A1C9G7	NRPS-like enzyme, putative.	PKS-like enzyme, putative.	0.446
ACLA_004290	ACLA_098920	A1C5P7	A1CN13	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.604
ACLA_013430	ACLA_002670	A1CAZ0	A1C588	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.570
ACLA_013430	ACLA_061310	A1CAZ0	A1CCB3	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.570
ACLA_013430	ACLA_063030	A1CAZ0	A1CCS9	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.466
ACLA_013430	ACLA_087700	A1CAZ0	A1CUS7	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.486
ACLA_013430	ACLA_094600	A1CAZ0	A1CFW1	NRPS-like enzyme, putative.	Polyketide synthase, putative.	0.486
ACLA_017140	ACLA_017150	A1CBZ9	A1CC00	AMP-binding domain-containing protein.	AMP dependent CoA ligase.	0.856
ACLA_017150	ACLA_017140	A1CC00	A1CBZ9	AMP dependent CoA ligase.	AMP-binding domain-containing protein.	0.856
ACLA_017890	ACLA_042410	A1CN65	A1CLJ5	Nonribosomal peptide synthase, putative.	Polyketide synthase, putative.	0.430