(5 nodes) Mixed, incl. Circularly permuted (CP)-type guanine nucleotide-binding (G) domain, and Dual specificity phosphatase, catalytic domain network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_075660	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (533 aa)
	ACLA_075730	Curved DNA-binding protein (42 kDa protein). (408 aa)
	ACLA_009840	Ribosome biogenesis GTPase Lsg1, putative. (679 aa)
	ACLA_090130	C2H2 finger domain protein, putative. (441 aa)
	ACLA_046390	Dual specificity phosphatase, putative. (350 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_009840	ACLA_046390	A1C9Z3	A1CH18	Ribosome biogenesis GTPase Lsg1, putative.	Dual specificity phosphatase, putative.	0.948
ACLA_009840	ACLA_075660	A1C9Z3	A1C806	Ribosome biogenesis GTPase Lsg1, putative.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.991
ACLA_009840	ACLA_075730	A1C9Z3	A1C813	Ribosome biogenesis GTPase Lsg1, putative.	Curved DNA-binding protein (42 kDa protein).	0.979
ACLA_009840	ACLA_090130	A1C9Z3	A1CEM1	Ribosome biogenesis GTPase Lsg1, putative.	C2H2 finger domain protein, putative.	0.957
ACLA_046390	ACLA_009840	A1CH18	A1C9Z3	Dual specificity phosphatase, putative.	Ribosome biogenesis GTPase Lsg1, putative.	0.948
ACLA_046390	ACLA_075660	A1CH18	A1C806	Dual specificity phosphatase, putative.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.955
ACLA_046390	ACLA_075730	A1CH18	A1C813	Dual specificity phosphatase, putative.	Curved DNA-binding protein (42 kDa protein).	0.784
ACLA_046390	ACLA_090130	A1CH18	A1CEM1	Dual specificity phosphatase, putative.	C2H2 finger domain protein, putative.	0.780
ACLA_075660	ACLA_009840	A1C806	A1C9Z3	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Ribosome biogenesis GTPase Lsg1, putative.	0.991
ACLA_075660	ACLA_046390	A1C806	A1CH18	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Dual specificity phosphatase, putative.	0.955
ACLA_075660	ACLA_075730	A1C806	A1C813	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Curved DNA-binding protein (42 kDa protein).	0.997
ACLA_075660	ACLA_090130	A1C806	A1CEM1	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	C2H2 finger domain protein, putative.	0.979
ACLA_075730	ACLA_009840	A1C813	A1C9Z3	Curved DNA-binding protein (42 kDa protein).	Ribosome biogenesis GTPase Lsg1, putative.	0.979
ACLA_075730	ACLA_046390	A1C813	A1CH18	Curved DNA-binding protein (42 kDa protein).	Dual specificity phosphatase, putative.	0.784
ACLA_075730	ACLA_075660	A1C813	A1C806	Curved DNA-binding protein (42 kDa protein).	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.997
ACLA_075730	ACLA_090130	A1C813	A1CEM1	Curved DNA-binding protein (42 kDa protein).	C2H2 finger domain protein, putative.	0.957
ACLA_090130	ACLA_009840	A1CEM1	A1C9Z3	C2H2 finger domain protein, putative.	Ribosome biogenesis GTPase Lsg1, putative.	0.957
ACLA_090130	ACLA_046390	A1CEM1	A1CH18	C2H2 finger domain protein, putative.	Dual specificity phosphatase, putative.	0.780
ACLA_090130	ACLA_075660	A1CEM1	A1C806	C2H2 finger domain protein, putative.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.979
ACLA_090130	ACLA_075730	A1CEM1	A1C813	C2H2 finger domain protein, putative.	Curved DNA-binding protein (42 kDa protein).	0.957