STRINGSTRING
ACLA_057210 ACLA_057210 ACLA_057320 ACLA_057320 ACLA_057960 ACLA_057960 ACLA_058130 ACLA_058130 ACLA_058360 ACLA_058360 ACLA_058960 ACLA_058960 ACLA_000670 ACLA_000670 ACLA_002100 ACLA_002100 ACLA_002580 ACLA_002580 ACLA_002730 ACLA_002730 ACLA_003430 ACLA_003430 ACLA_068260 ACLA_068260 ACLA_068370 ACLA_068370 ACLA_069360 ACLA_069360 ACLA_071800 ACLA_071800 ACLA_073340 ACLA_073340 ACLA_073860 ACLA_073860 ACLA_074440 ACLA_074440 ACLA_074450 ACLA_074450 ACLA_075860 ACLA_075860 ACLA_054030 ACLA_054030 ACLA_054770 ACLA_054770 ACLA_055460 ACLA_055460 ACLA_008910 ACLA_008910 ACLA_010070 ACLA_010070 ACLA_011490 ACLA_011490 ACLA_011830 ACLA_011830 ACLA_012010 ACLA_012010 ACLA_012790 ACLA_012790 ACLA_013700 ACLA_013700 ACLA_014040 ACLA_014040 ACLA_014940 ACLA_014940 ACLA_015620 ACLA_015620 ACLA_015740 ACLA_015740 ACLA_015770 ACLA_015770 ACLA_016490 ACLA_016490 ACLA_017060 ACLA_017060 ACLA_007670 ACLA_007670 lsm6 lsm6 ACLA_088270 ACLA_088270 ACLA_089160 ACLA_089160 ACLA_089420 ACLA_089420 ACLA_089530 ACLA_089530 ACLA_091810 ACLA_091810 ACLA_093160 ACLA_093160 ACLA_065250 ACLA_065250 ACLA_065620 ACLA_065620 ACLA_065640 ACLA_065640 ACLA_046860 ACLA_046860 ACLA_047110 ACLA_047110 prp28 prp28 ACLA_049040 ACLA_049040 ACLA_049460 ACLA_049460 ACLA_049470 ACLA_049470 ACLA_049620 ACLA_049620 ACLA_050650 ACLA_050650 ACLA_050870 ACLA_050870 ACLA_050900 ACLA_050900 ACLA_050920 ACLA_050920 ACLA_034390 ACLA_034390 ACLA_039420 ACLA_039420 ACLA_040160 ACLA_040160 ACLA_041070 ACLA_041070 ACLA_095350 ACLA_095350 ACLA_096280 ACLA_096280 ACLA_018320 ACLA_018320 ACLA_018520 ACLA_018520 ACLA_021410 ACLA_021410 ACLA_021570 ACLA_021570 LSM8 LSM8 ACLA_024810 ACLA_024810 ACLA_025340 ACLA_025340 ACLA_025350 ACLA_025350 prp5 prp5 ACLA_026230 ACLA_026230 ACLA_028120 ACLA_028120 ACLA_028900 ACLA_028900 ACLA_030410 ACLA_030410 ACLA_030610 ACLA_030610 ACLA_030750 ACLA_030750 ACLA_079710 ACLA_079710 ACLA_080710 ACLA_080710 ACLA_081440 ACLA_081440 ACLA_083430 ACLA_083430 ACLA_086710 ACLA_086710
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_057210Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (150 aa)
ACLA_057320U5 snRNP component (116 kDa), putative. (986 aa)
ACLA_057960Pre-mRNA splicing factor, putative. (538 aa)
ACLA_058130Pre-mRNA splicing helicase, putative. (2209 aa)
ACLA_058360Small nuclear ribonucleoprotein G. (78 aa)
ACLA_058960Uncharacterized protein. (370 aa)
ACLA_000670Splicing factor 3b, subunit 2, 145kD. (548 aa)
ACLA_002100Transcriptional regulator Cwf13/SkiP, putative. (578 aa)
ACLA_002580mRNA splicing protein Yju2. (273 aa)
ACLA_002730Splicing factor 3a subunit 3, putative. (504 aa)
ACLA_003430Peptidyl-prolyl cis-trans isomerase, putative. (562 aa)
ACLA_068260mRNA splicing factor (Prp1/Zer1), putative. (939 aa)
ACLA_068370Pre-mRNA branch site protein p14, putative. (113 aa)
ACLA_069360Cir_N domain-containing protein. (422 aa)
ACLA_071800Peptidyl prolyl cis-trans isomerase Cyclophilin, putative. (152 aa)
ACLA_073340RING-type domain-containing protein. (1008 aa)
ACLA_073860Splicing factor 3B subunit 1, putative. (1246 aa)
ACLA_074440LSM domain protein. (88 aa)
ACLA_074450DUF866 domain protein. (160 aa)
ACLA_075860Pre-mRNA splicing factor ini1, putative. (108 aa)
ACLA_054030Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1421 aa)
ACLA_054770Pre-RNA splicing factor Slt11, putative. (383 aa)
ACLA_055460Uncharacterized protein. (337 aa)
ACLA_008910Cell cycle control protein Cwf14/Bud31, putative. (56 aa)
ACLA_010070Cell cycle control protein (Cwf2), putative. (418 aa)
ACLA_011490RNA binding protein, putative. (247 aa)
ACLA_011830Pre-mRNA splicing factor, putative. (242 aa)
ACLA_012010RNA binding domain protein. (284 aa)
ACLA_012790CCCH and RING finger protein (Znf183), putative. (334 aa)
ACLA_013700RNA helicase-like splicing factor (HRH1), putative. (1231 aa)
ACLA_014040Small nuclear ribonucleoprotein U2, A. (266 aa)
ACLA_014940DNA repair and transcription protein (Xab2), putative. (854 aa)
ACLA_015620U6 small nuclear ribonucleoprotein (Lsm3), putative. (74 aa)
ACLA_015740Small nuclear ribonucleoprotein Sm D2. (115 aa)
ACLA_015770Microfibrillar-associated protein MfaP1, putative. (503 aa)
ACLA_016490Cell cycle control protein (Cwf8), putative. (526 aa)
ACLA_017060Uncharacterized protein. (79 aa)
ACLA_007670Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
lsm6U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] (78 aa)
ACLA_088270RNA binding domain protein. (194 aa)
ACLA_089160Cell division control protein (Cdc5), putative. (792 aa)
ACLA_089420ER membrane protein (Pkr1), putative. (176 aa)
ACLA_089530Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
ACLA_091810Pre-mRNA splicing factor (Prp8), putative. (2354 aa)
ACLA_093160Pre-mRNA splicing factor (Prp24), putative. (1310 aa)
ACLA_065250U5 snRNP complex subunit, putative. (359 aa)
ACLA_065620Sexual development protein EsdC, putative. (261 aa)
ACLA_065640DUF1716 domain protein. (585 aa)
ACLA_046860G-patch domain protein (Spp2), putative. (534 aa)
ACLA_047110Small nuclear ribonucleoprotein SmB, putative. (219 aa)
prp28Pre-mRNA-splicing ATP-dependent RNA helicase prp28; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity). (798 aa)
ACLA_049040SYF2 splicing factor domain protein. (416 aa)
ACLA_049460Small nuclear ribonucleoprotein Sm D3. (136 aa)
ACLA_049470Uncharacterized protein. (408 aa)
ACLA_049620DNA binding protein SART-1, putative. (668 aa)
ACLA_050650G-patch domain protein (TFIP11), putative. (771 aa)
ACLA_050870Cell cycle control protein (Cwf19), putative. (706 aa)
ACLA_050900U1 zinc finger domain protein. (285 aa)
ACLA_050920Splicing factor 3a subunit 2, putative. (272 aa)
ACLA_034390Pre-mRNA splicing factor, putative. (528 aa)
ACLA_039420FHA domain protein SNIP1, putative. (315 aa)
ACLA_040160Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (152 aa)
ACLA_041070Uncharacterized protein. (187 aa)
ACLA_095350Splicing factor 3b subunit 4. (354 aa)
ACLA_096280RNA binding protein, putative. (207 aa)
ACLA_018320Uncharacterized protein. (454 aa)
ACLA_018520mRNA splicing factor (Prp18), putative. (370 aa)
ACLA_021410C2H2 finger domain protein, putative. (218 aa)
ACLA_021570U4/U6 small nuclear ribonucleoprotein, putative. (586 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
ACLA_024810mRNA splicing protein (Prp5), putative. (452 aa)
ACLA_025340Cell cycle control protein (Cwf4), putative. (676 aa)
ACLA_025350Pre-mRNA splicing factor (Prp31), putative. (518 aa)
prp5Pre-mRNA-processing ATP-dependent RNA helicase prp5; ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA (By similarity); Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (1192 aa)
ACLA_026230ATP dependent RNA helicase, putative. (672 aa)
ACLA_028120Uncharacterized protein. (216 aa)
ACLA_028900Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
ACLA_030410F-box domain protein. (611 aa)
ACLA_030610Uncharacterized protein. (1298 aa)
ACLA_030750mRNA splicing factor RNA helicase (Prp16), putative. (911 aa)
ACLA_079710mRNA splicing factor RNA helicase (Cdc28), putative. (1129 aa)
ACLA_080710Cwf15/Cwc15 cell cycle control family protein. (239 aa)
ACLA_081440mRNA splicing factor (Prp17), putative. (582 aa)
ACLA_083430FF domain protein. (576 aa)
ACLA_086710Nuclear mRNA splicing factor, putative. (1209 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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