(5 nodes) Mixed, incl. FF domain, and Zinc finger, double-stranded RNA binding network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_011490	RNA binding protein, putative. (247 aa)
	ACLA_015770	Microfibrillar-associated protein MfaP1, putative. (503 aa)
	ACLA_041070	Uncharacterized protein. (187 aa)
	ACLA_021410	C2H2 finger domain protein, putative. (218 aa)
	ACLA_083430	FF domain protein. (576 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_011490	ACLA_015770	A1CAF4	A1CBL7	RNA binding protein, putative.	Microfibrillar-associated protein MfaP1, putative.	0.997
ACLA_011490	ACLA_021410	A1CAF4	A1CP56	RNA binding protein, putative.	C2H2 finger domain protein, putative.	0.983
ACLA_011490	ACLA_041070	A1CAF4	A1CL67	RNA binding protein, putative.	Uncharacterized protein.	0.954
ACLA_011490	ACLA_083430	A1CAF4	A1CTL1	RNA binding protein, putative.	FF domain protein.	0.993
ACLA_015770	ACLA_011490	A1CBL7	A1CAF4	Microfibrillar-associated protein MfaP1, putative.	RNA binding protein, putative.	0.997
ACLA_015770	ACLA_021410	A1CBL7	A1CP56	Microfibrillar-associated protein MfaP1, putative.	C2H2 finger domain protein, putative.	0.998
ACLA_015770	ACLA_041070	A1CBL7	A1CL67	Microfibrillar-associated protein MfaP1, putative.	Uncharacterized protein.	0.965
ACLA_015770	ACLA_083430	A1CBL7	A1CTL1	Microfibrillar-associated protein MfaP1, putative.	FF domain protein.	0.995
ACLA_021410	ACLA_011490	A1CP56	A1CAF4	C2H2 finger domain protein, putative.	RNA binding protein, putative.	0.983
ACLA_021410	ACLA_015770	A1CP56	A1CBL7	C2H2 finger domain protein, putative.	Microfibrillar-associated protein MfaP1, putative.	0.998
ACLA_021410	ACLA_041070	A1CP56	A1CL67	C2H2 finger domain protein, putative.	Uncharacterized protein.	0.861
ACLA_021410	ACLA_083430	A1CP56	A1CTL1	C2H2 finger domain protein, putative.	FF domain protein.	0.992
ACLA_041070	ACLA_011490	A1CL67	A1CAF4	Uncharacterized protein.	RNA binding protein, putative.	0.954
ACLA_041070	ACLA_015770	A1CL67	A1CBL7	Uncharacterized protein.	Microfibrillar-associated protein MfaP1, putative.	0.965
ACLA_041070	ACLA_021410	A1CL67	A1CP56	Uncharacterized protein.	C2H2 finger domain protein, putative.	0.861
ACLA_041070	ACLA_083430	A1CL67	A1CTL1	Uncharacterized protein.	FF domain protein.	0.763
ACLA_083430	ACLA_011490	A1CTL1	A1CAF4	FF domain protein.	RNA binding protein, putative.	0.993
ACLA_083430	ACLA_015770	A1CTL1	A1CBL7	FF domain protein.	Microfibrillar-associated protein MfaP1, putative.	0.995
ACLA_083430	ACLA_021410	A1CTL1	A1CP56	FF domain protein.	C2H2 finger domain protein, putative.	0.992
ACLA_083430	ACLA_041070	A1CTL1	A1CL67	FF domain protein.	Uncharacterized protein.	0.763