(11 nodes) Commitment complex, and U1 snRNP network (Aspergillus clavatus)

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second shell of interactors

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Predicted Interactions

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Your Input:
	ACLA_068880	Uncharacterized protein. (760 aa)
	ACLA_072770	Arsenite resistance protein Ars2, putative. (916 aa)
	ACLA_016460	U1 small nuclear ribonucleoprotein 70 kDa. (377 aa)
	ACLA_065300	mRNA binding post-transcriptional regulator (Csx1), putative. (417 aa)
	ACLA_048370	DEAD/DEAH box helicase, putative. (590 aa)
	ACLA_052350	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (218 aa)
	ACLA_038770	Zinc knuckle transcription factor/splicing factor MSL5/ZFM1, putative. (568 aa)
	ACLA_095410	Cap binding protein. (848 aa)
	ACLA_025230	Formin binding protein (FNB3), putative. (805 aa)
	ACLA_080400	Nuclear cap-binding protein subunit 2. (138 aa)
	ACLA_083400	U1 snRNP splicing complex subunit (Luc7), putative. (277 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_016460	ACLA_025230	A1CBT2	A1CQ85	U1 small nuclear ribonucleoprotein 70 kDa.	Formin binding protein (FNB3), putative.	0.934
ACLA_016460	ACLA_038770	A1CBT2	A1CKI8	U1 small nuclear ribonucleoprotein 70 kDa.	Zinc knuckle transcription factor/splicing factor MSL5/ZFM1, putative.	0.637
ACLA_016460	ACLA_048370	A1CBT2	A1CHL2	U1 small nuclear ribonucleoprotein 70 kDa.	DEAD/DEAH box helicase, putative.	0.952
ACLA_016460	ACLA_052350	A1CBT2	A1CIQ7	U1 small nuclear ribonucleoprotein 70 kDa.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.997
ACLA_016460	ACLA_065300	A1CBT2	A1CG16	U1 small nuclear ribonucleoprotein 70 kDa.	mRNA binding post-transcriptional regulator (Csx1), putative.	0.911
ACLA_016460	ACLA_068880	A1CBT2	A1C639	U1 small nuclear ribonucleoprotein 70 kDa.	Uncharacterized protein.	0.994
ACLA_016460	ACLA_080400	A1CBT2	A1CSR9	U1 small nuclear ribonucleoprotein 70 kDa.	Nuclear cap-binding protein subunit 2.	0.995
ACLA_016460	ACLA_083400	A1CBT2	A1CTK8	U1 small nuclear ribonucleoprotein 70 kDa.	U1 snRNP splicing complex subunit (Luc7), putative.	0.994
ACLA_016460	ACLA_095410	A1CBT2	A1CM21	U1 small nuclear ribonucleoprotein 70 kDa.	Cap binding protein.	0.930
ACLA_025230	ACLA_016460	A1CQ85	A1CBT2	Formin binding protein (FNB3), putative.	U1 small nuclear ribonucleoprotein 70 kDa.	0.934
ACLA_025230	ACLA_038770	A1CQ85	A1CKI8	Formin binding protein (FNB3), putative.	Zinc knuckle transcription factor/splicing factor MSL5/ZFM1, putative.	0.894
ACLA_025230	ACLA_048370	A1CQ85	A1CHL2	Formin binding protein (FNB3), putative.	DEAD/DEAH box helicase, putative.	0.862
ACLA_025230	ACLA_052350	A1CQ85	A1CIQ7	Formin binding protein (FNB3), putative.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.867
ACLA_025230	ACLA_065300	A1CQ85	A1CG16	Formin binding protein (FNB3), putative.	mRNA binding post-transcriptional regulator (Csx1), putative.	0.751
ACLA_025230	ACLA_068880	A1CQ85	A1C639	Formin binding protein (FNB3), putative.	Uncharacterized protein.	0.969
ACLA_025230	ACLA_080400	A1CQ85	A1CSR9	Formin binding protein (FNB3), putative.	Nuclear cap-binding protein subunit 2.	0.832
ACLA_025230	ACLA_083400	A1CQ85	A1CTK8	Formin binding protein (FNB3), putative.	U1 snRNP splicing complex subunit (Luc7), putative.	0.922
ACLA_025230	ACLA_095410	A1CQ85	A1CM21	Formin binding protein (FNB3), putative.	Cap binding protein.	0.709
ACLA_038770	ACLA_016460	A1CKI8	A1CBT2	Zinc knuckle transcription factor/splicing factor MSL5/ZFM1, putative.	U1 small nuclear ribonucleoprotein 70 kDa.	0.637
ACLA_038770	ACLA_025230	A1CKI8	A1CQ85	Zinc knuckle transcription factor/splicing factor MSL5/ZFM1, putative.	Formin binding protein (FNB3), putative.	0.894