(12 nodes) mRNA cleavage and polyadenylation specificity factor complex network (Aspergillus clavatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	cft1	Protein cft1; RNA-binding component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation- dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Involved in poly(A) site recognition. May be involved in coupling transcription termination and mRNA 3'-end formation (By similarity); Belongs to the CFT1 family. (1401 aa)
	ACLA_057780	DUF3453 domain-containing protein. (764 aa)
	ACLA_068090	Retinoblastoma-binding protein. (631 aa)
	ACLA_015430	WD repeat protein. (371 aa)
	ACLA_090760	Transcription/RNA-processing factor Ssu72. (284 aa)
	ACLA_037490	Cleavage and polyadenylation specificity factor subunit 2. (1014 aa)
	ACLA_018680	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative. (878 aa)
	ACLA_019990	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (598 aa)
	ACLA_029690	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	ACLA_031620	mRNA cleavage and polyadenylation specificity factor complex subunit, putative. (255 aa)
	ACLA_080220	WD repeat protein. (615 aa)
	ACLA_084420	Cleavage and polyadenylylation specificity factor subunit Fip1, putative. (320 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_015430	ACLA_018680	A1CBI3	A1CNE3	WD repeat protein.	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	0.995
ACLA_015430	ACLA_019990	A1CBI3	A1CNS3	WD repeat protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.970
ACLA_015430	ACLA_029690	A1CBI3	A1CRG8	WD repeat protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.997
ACLA_015430	ACLA_031620	A1CBI3	A1CS08	WD repeat protein.	mRNA cleavage and polyadenylation specificity factor complex subunit, putative.	0.997
ACLA_015430	ACLA_037490	A1CBI3	A1CK68	WD repeat protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.994
ACLA_015430	ACLA_057780	A1CBI3	A1C3Y2	WD repeat protein.	DUF3453 domain-containing protein.	0.989
ACLA_015430	ACLA_068090	A1CBI3	A1C5W1	WD repeat protein.	Retinoblastoma-binding protein.	0.992
ACLA_015430	ACLA_080220	A1CBI3	A1CSQ1	WD repeat protein.	WD repeat protein.	0.997
ACLA_015430	ACLA_084420	A1CBI3	A1CTW0	WD repeat protein.	Cleavage and polyadenylylation specificity factor subunit Fip1, putative.	0.994
ACLA_015430	ACLA_090760	A1CBI3	A1CET4	WD repeat protein.	Transcription/RNA-processing factor Ssu72.	0.998
ACLA_015430	cft1	A1CBI3	A1C3U1	WD repeat protein.	Protein cft1; RNA-binding component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation- dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Involved in poly(A) site recognition. May be involved in coupling transcription termination and mRNA 3'-end formation (By similarity); Belongs to the CFT1 family.	0.994
ACLA_018680	ACLA_015430	A1CNE3	A1CBI3	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	WD repeat protein.	0.995
ACLA_018680	ACLA_019990	A1CNE3	A1CNS3	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.996
ACLA_018680	ACLA_029690	A1CNE3	A1CRG8	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.993
ACLA_018680	ACLA_031620	A1CNE3	A1CS08	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	mRNA cleavage and polyadenylation specificity factor complex subunit, putative.	0.999
ACLA_018680	ACLA_037490	A1CNE3	A1CK68	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
ACLA_018680	ACLA_057780	A1CNE3	A1C3Y2	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	DUF3453 domain-containing protein.	0.999
ACLA_018680	ACLA_068090	A1CNE3	A1C5W1	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	Retinoblastoma-binding protein.	0.997
ACLA_018680	ACLA_080220	A1CNE3	A1CSQ1	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	WD repeat protein.	0.999
ACLA_018680	ACLA_084420	A1CNE3	A1CTW0	Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.	Cleavage and polyadenylylation specificity factor subunit Fip1, putative.	0.999