STRINGSTRING
ACLA_058720 ACLA_058720 ACLA_058730 ACLA_058730 ACLA_000660 ACLA_000660 ACLA_001690 ACLA_001690 ACLA_069340 ACLA_069340 ACLA_069970 ACLA_069970 ACLA_070150 ACLA_070150 ACLA_071910 ACLA_071910 ACLA_009130 ACLA_009130 ACLA_010010 ACLA_010010 ACLA_011550 ACLA_011550 ACLA_005560 ACLA_005560 ACLA_007050 ACLA_007050 ACLA_092960 ACLA_092960 ACLA_065630 ACLA_065630 ACLA_047860 ACLA_047860 ACLA_033860 ACLA_033860 ACLA_035630 ACLA_035630 ACLA_035980 ACLA_035980 ACLA_039310 ACLA_039310 ACLA_020720 ACLA_020720 ACLA_023200 ACLA_023200 ACLA_025480 ACLA_025480 ACLA_026290 ACLA_026290 ACLA_026870 ACLA_026870 ACLA_080350 ACLA_080350 ACLA_087120 ACLA_087120
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_058720Uncharacterized protein. (508 aa)
ACLA_058730RNA polymerase II subunit 7. (169 aa)
ACLA_000660Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (135 aa)
ACLA_001690Uncharacterized protein. (215 aa)
ACLA_069340DUF408 domain protein. (322 aa)
ACLA_069970Uncharacterized protein. (560 aa)
ACLA_070150Pol II transcription elongation factor subunit Cdc73, putative. (482 aa)
ACLA_071910RNA polymerase II subunit 3. (333 aa)
ACLA_009130RNA polymerase II transcription elongation factor (Ctr9), putative. (1229 aa)
ACLA_010010Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
ACLA_011550Transcription factor RfeG, putative. (269 aa)
ACLA_005560DNA-directed RNA polymerase II subunit RPB11a, putative. (165 aa)
ACLA_007050FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (590 aa)
ACLA_092960RNA polymerase II transcription elongation factor Rtf1p, putative. (605 aa)
ACLA_065630DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1257 aa)
ACLA_047860Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1045 aa)
ACLA_033860Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1421 aa)
ACLA_035630Transcription elongation factor S-II. (304 aa)
ACLA_035980Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
ACLA_039310RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (826 aa)
ACLA_020720DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1765 aa)
ACLA_023200Transcriptional elongation factor Iws1, putative. (450 aa)
ACLA_025480HMG box protein. (322 aa)
ACLA_026290Uncharacterized protein. (468 aa)
ACLA_026870Transcription elongation complex subunit (Cdc68). (1019 aa)
ACLA_080350DNA directed RNA polymerase II 15 kDa subunit, putative. (122 aa)
ACLA_087120Uncharacterized protein. (313 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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