22 items (Aspergillus clavatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_002350	C6 transcription factor, putative. (576 aa)
	ACLA_003910	Uncharacterized protein. (319 aa)
	ACLA_072060	Transcriptional regulator Medusa. (716 aa)
	ACLA_072300	MmgE/PrpD family protein. (1110 aa)
	ACLA_072800	Uncharacterized protein. (397 aa)
	ACLA_073870	C2H2 finger domain protein FlbC. (356 aa)
	ACLA_075030	Uncharacterized protein. (495 aa)
	ACLA_009520	Sexual development transcription factor SteA. (691 aa)
	ACLA_014240	Uncharacterized protein. (350 aa)
	efg1	rRNA-processing protein efg1; Involved in rRNA processing; Belongs to the EFG1 family. (315 aa)
	ACLA_049020	Velvet domain-containing protein. (475 aa)
	ACLA_049030	Uncharacterized protein. (647 aa)
	ACLA_050030	Velvet domain-containing protein. (437 aa)
	ACLA_052200	Developmental regulatory protein WetA. (562 aa)
	ACLA_040830	Extracellular serine-threonine rich protein. (855 aa)
	ACLA_018960	C2H2 type conidiation transcription factor BrlA. (423 aa)
	ACLA_020740	Regulator of secondary metabolism LaeA. (372 aa)
	ACLA_022920	Sexual development activator VeA. (578 aa)
	ACLA_029840	Transcription factor AbaA. (801 aa)
	ACLA_031250	MYB family conidiophore development protein FlbD, putative. (304 aa)
	ACLA_032540	Velvet domain-containing protein. (358 aa)
	ACLA_079840	APSES transcription factor StuA. (643 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_002350	ACLA_014240	A1C556	A1CB69	C6 transcription factor, putative.	Uncharacterized protein.	0.606
ACLA_002350	ACLA_018960	A1C556	A1CNH1	C6 transcription factor, putative.	C2H2 type conidiation transcription factor BrlA.	0.593
ACLA_002350	ACLA_031250	A1C556	A1CRX1	C6 transcription factor, putative.	MYB family conidiophore development protein FlbD, putative.	0.613
ACLA_002350	ACLA_050030	A1C556	A1CI26	C6 transcription factor, putative.	Velvet domain-containing protein.	0.594
ACLA_002350	ACLA_072800	A1C556	A1C776	C6 transcription factor, putative.	Uncharacterized protein.	0.598
ACLA_002350	ACLA_073870	A1C556	A1C7I0	C6 transcription factor, putative.	C2H2 finger domain protein FlbC.	0.613
ACLA_002350	ACLA_075030	A1C556	A1C7U4	C6 transcription factor, putative.	Uncharacterized protein.	0.606
ACLA_009520	ACLA_029840	A1C9W1	A1CRI0	Sexual development transcription factor SteA.	Transcription factor AbaA.	0.997
ACLA_009520	ACLA_079840	A1C9W1	A1CSL3	Sexual development transcription factor SteA.	APSES transcription factor StuA.	0.482
ACLA_014240	ACLA_002350	A1CB69	A1C556	Uncharacterized protein.	C6 transcription factor, putative.	0.606
ACLA_014240	ACLA_031250	A1CB69	A1CRX1	Uncharacterized protein.	MYB family conidiophore development protein FlbD, putative.	0.593
ACLA_014240	ACLA_073870	A1CB69	A1C7I0	Uncharacterized protein.	C2H2 finger domain protein FlbC.	0.593
ACLA_014240	ACLA_075030	A1CB69	A1C7U4	Uncharacterized protein.	Uncharacterized protein.	0.606
ACLA_018960	ACLA_002350	A1CNH1	A1C556	C2H2 type conidiation transcription factor BrlA.	C6 transcription factor, putative.	0.593
ACLA_018960	ACLA_020740	A1CNH1	A1CNZ6	C2H2 type conidiation transcription factor BrlA.	Regulator of secondary metabolism LaeA.	0.922
ACLA_018960	ACLA_022920	A1CNH1	A1CPK7	C2H2 type conidiation transcription factor BrlA.	Sexual development activator VeA.	0.927
ACLA_018960	ACLA_029840	A1CNH1	A1CRI0	C2H2 type conidiation transcription factor BrlA.	Transcription factor AbaA.	0.974
ACLA_018960	ACLA_031250	A1CNH1	A1CRX1	C2H2 type conidiation transcription factor BrlA.	MYB family conidiophore development protein FlbD, putative.	0.781
ACLA_018960	ACLA_032540	A1CNH1	A1CS98	C2H2 type conidiation transcription factor BrlA.	Velvet domain-containing protein.	0.705
ACLA_018960	ACLA_049020	A1CNH1	A1CHS5	C2H2 type conidiation transcription factor BrlA.	Velvet domain-containing protein.	0.523