(13 nodes) Carbohydrate phosphorylation, and Mannose-6-phosphate isomerase network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_068420	Phosphotransferase. (490 aa)
	mpdA	Mannitol-1-phosphate 5-dehydrogenase; Catalyzes the NAD(H)-dependent interconversion of D-fructose 6-phosphate and D-mannitol 1-phosphate in the mannitol metabolic pathway. (388 aa)
	ACLA_070560	Alpha-glucosidase/alpha-amylase, putative. (608 aa)
	ACLA_061500	Phosphoglucomutase, putative. (543 aa)
	ACLA_005730	Phosphotransferase. (548 aa)
	ACLA_007490	Fructose-2,6-bisphosphatase. (453 aa)
	ACLA_094550	Beta-fructofuranosidase, putative; Belongs to the glycosyl hydrolase 32 family. (513 aa)
	ACLA_047790	Mannose-6-phosphate isomerase, class I. (403 aa)
	ACLA_095440	6-phosphofructo-2-kinase, putative. (534 aa)
	ACLA_096650	Phosphotransferase. (474 aa)
	ACLA_098220	Phosphotransferase. (492 aa)
	ACLA_022150	Mannose-6-phosphate isomerase. (457 aa)
	ACLA_027360	6-phosphofructo-2-kinase 1. (709 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_005730	ACLA_007490	A1CD90	A1CDR3	Phosphotransferase.	Fructose-2,6-bisphosphatase.	0.911
ACLA_005730	ACLA_022150	A1CD90	A1CPD0	Phosphotransferase.	Mannose-6-phosphate isomerase.	0.923
ACLA_005730	ACLA_027360	A1CD90	A1CQU3	Phosphotransferase.	6-phosphofructo-2-kinase 1.	0.917
ACLA_005730	ACLA_047790	A1CD90	A1CHF5	Phosphotransferase.	Mannose-6-phosphate isomerase, class I.	0.915
ACLA_005730	ACLA_061500	A1CD90	A1CCD1	Phosphotransferase.	Phosphoglucomutase, putative.	0.932
ACLA_005730	ACLA_068420	A1CD90	A1C5Z4	Phosphotransferase.	Phosphotransferase.	0.824
ACLA_005730	ACLA_070560	A1CD90	A1C6K3	Phosphotransferase.	Alpha-glucosidase/alpha-amylase, putative.	0.921
ACLA_005730	ACLA_094550	A1CD90	A1CFV6	Phosphotransferase.	Beta-fructofuranosidase, putative; Belongs to the glycosyl hydrolase 32 family.	0.950
ACLA_005730	ACLA_095440	A1CD90	A1CM24	Phosphotransferase.	6-phosphofructo-2-kinase, putative.	0.912
ACLA_005730	ACLA_096650	A1CD90	A1CME5	Phosphotransferase.	Phosphotransferase.	0.827
ACLA_005730	ACLA_098220	A1CD90	A1CMU3	Phosphotransferase.	Phosphotransferase.	0.936
ACLA_005730	mpdA	A1CD90	A1C6B4	Phosphotransferase.	Mannitol-1-phosphate 5-dehydrogenase; Catalyzes the NAD(H)-dependent interconversion of D-fructose 6-phosphate and D-mannitol 1-phosphate in the mannitol metabolic pathway.	0.957
ACLA_007490	ACLA_005730	A1CDR3	A1CD90	Fructose-2,6-bisphosphatase.	Phosphotransferase.	0.911
ACLA_007490	ACLA_022150	A1CDR3	A1CPD0	Fructose-2,6-bisphosphatase.	Mannose-6-phosphate isomerase.	0.902
ACLA_007490	ACLA_027360	A1CDR3	A1CQU3	Fructose-2,6-bisphosphatase.	6-phosphofructo-2-kinase 1.	0.909
ACLA_007490	ACLA_047790	A1CDR3	A1CHF5	Fructose-2,6-bisphosphatase.	Mannose-6-phosphate isomerase, class I.	0.902
ACLA_007490	ACLA_068420	A1CDR3	A1C5Z4	Fructose-2,6-bisphosphatase.	Phosphotransferase.	0.911
ACLA_007490	ACLA_095440	A1CDR3	A1CM24	Fructose-2,6-bisphosphatase.	6-phosphofructo-2-kinase, putative.	0.986
ACLA_007490	ACLA_096650	A1CDR3	A1CME5	Fructose-2,6-bisphosphatase.	Phosphotransferase.	0.911
ACLA_007490	ACLA_098220	A1CDR3	A1CMU3	Fructose-2,6-bisphosphatase.	Phosphotransferase.	0.916