(29 nodes) Positive regulation of gene expression network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_046890	Translation initiation factor EF-2 gamma subunit, putative. (516 aa)
	ACLA_052060	Zinc knuckle transcription factor (CnjB), putative. (488 aa)
	ACLA_033420	DnaJ and TPR domain protein. (544 aa)
	dhh1	ATP-dependent RNA helicase dhh1; ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. Is involved in G1/S DNA-damage checkpoint recovery, probably through the regulation of the translational status of a subset of mRNAs. May also have a role in translation and mRNA nuclear export (By similarity); Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. (503 aa)
	ACLA_034920	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	ACLA_035280	Radical SAM domain protein. (317 aa)
	ACLA_035980	Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
	ACLA_038420	Serine/threonine protein kinase (Prp4), putative. (800 aa)
	ACLA_039120	YagE family protein. (438 aa)
	guf1	Translation factor guf1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (664 aa)
	ACLA_022700	DUF4210 domain-containing protein. (684 aa)
	ACLA_024830	TMF_TATA_bd domain-containing protein. (876 aa)
	ACLA_025240	RNase L inhibitor of the ABC superfamily, putative. (633 aa)
	ACLA_026410	RXT2_N domain-containing protein. (513 aa)
	ACLA_026960	Zinc knuckle domain protein. (177 aa)
	ACLA_027570	30S ribosomal subunit S4, putative. (464 aa)
	ACLA_030560	Eukaryotic translation initiation factor 5A. (158 aa)
	ACLA_079480	MIT domain-containing protein. (1232 aa)
	ACLA_079540	Ubiquinol-cytochrome C chaperone, putative. (232 aa)
	ACLA_085130	Nonsense-mediated mRNA decay protein Upf3, putative. (580 aa)
	ACLA_082220	Nuclear polyadenylated RNA-binding protein Nab2, putative. (495 aa)
	ACLA_058730	RNA polymerase II subunit 7. (169 aa)
	ACLA_010070	Cell cycle control protein (Cwf2), putative. (418 aa)
	ACLA_011700	Transcriptional regulator (Cti6), putative. (621 aa)
	ACLA_011710	Woronin body protein HexA, putative. (455 aa)
	ACLA_005480	YT521-B-like splicing factor, putative. (530 aa)
	ACLA_005970	3'-5' exonuclease/helicase (Wrn), putative. (391 aa)
	ACLA_065340	Zinc knuckle domain protein. (236 aa)
	ACLA_047690	Tyrosine--tRNA ligase. (622 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_005480	ACLA_010070	A1CD65	A1CA16	YT521-B-like splicing factor, putative.	Cell cycle control protein (Cwf2), putative.	0.436
ACLA_005480	ACLA_085130	A1CD65	A1CU31	YT521-B-like splicing factor, putative.	Nonsense-mediated mRNA decay protein Upf3, putative.	0.434
ACLA_005480	dhh1	A1CD65	A1CJ18	YT521-B-like splicing factor, putative.	ATP-dependent RNA helicase dhh1; ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. Is involved in G1/S DNA-damage checkpoint recovery, probably through the regulation of the translational status of a subset of mRNAs. May also have a role in translation and mRNA nuclear export (By similarity); Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily.	0.518
ACLA_010070	ACLA_005480	A1CA16	A1CD65	Cell cycle control protein (Cwf2), putative.	YT521-B-like splicing factor, putative.	0.436
ACLA_011700	ACLA_026410	A1CAH5	A1CQK3	Transcriptional regulator (Cti6), putative.	RXT2_N domain-containing protein.	0.842
ACLA_011710	ACLA_027570	A1CAH6	A1CQW4	Woronin body protein HexA, putative.	30S ribosomal subunit S4, putative.	0.868
ACLA_011710	ACLA_034920	A1CAH6	A1CJG5	Woronin body protein HexA, putative.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.868
ACLA_011710	ACLA_046890	A1CAH6	A1CH68	Woronin body protein HexA, putative.	Translation initiation factor EF-2 gamma subunit, putative.	0.622
ACLA_025240	ACLA_027570	A1CQ86	A1CQW4	RNase L inhibitor of the ABC superfamily, putative.	30S ribosomal subunit S4, putative.	0.744
ACLA_025240	ACLA_034920	A1CQ86	A1CJG5	RNase L inhibitor of the ABC superfamily, putative.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.884
ACLA_025240	ACLA_046890	A1CQ86	A1CH68	RNase L inhibitor of the ABC superfamily, putative.	Translation initiation factor EF-2 gamma subunit, putative.	0.897
ACLA_026410	ACLA_011700	A1CQK3	A1CAH5	RXT2_N domain-containing protein.	Transcriptional regulator (Cti6), putative.	0.842
ACLA_027570	ACLA_011710	A1CQW4	A1CAH6	30S ribosomal subunit S4, putative.	Woronin body protein HexA, putative.	0.868
ACLA_027570	ACLA_025240	A1CQW4	A1CQ86	30S ribosomal subunit S4, putative.	RNase L inhibitor of the ABC superfamily, putative.	0.744
ACLA_027570	ACLA_030560	A1CQW4	A1CRQ2	30S ribosomal subunit S4, putative.	Eukaryotic translation initiation factor 5A.	0.868
ACLA_027570	ACLA_046890	A1CQW4	A1CH68	30S ribosomal subunit S4, putative.	Translation initiation factor EF-2 gamma subunit, putative.	0.925
ACLA_027570	ACLA_079480	A1CQW4	A1CSH7	30S ribosomal subunit S4, putative.	MIT domain-containing protein.	0.682
ACLA_027570	guf1	A1CQW4	A1CLD7	30S ribosomal subunit S4, putative.	Translation factor guf1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.682
ACLA_030560	ACLA_027570	A1CRQ2	A1CQW4	Eukaryotic translation initiation factor 5A.	30S ribosomal subunit S4, putative.	0.868
ACLA_030560	ACLA_034920	A1CRQ2	A1CJG5	Eukaryotic translation initiation factor 5A.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.982