(9 nodes) Rough endoplasmic reticulum membrane network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_079600	SRP receptor beta subunit (Srp102), putative. (319 aa)
	ACLA_057610	Translocation protein (Sec66), putative. (265 aa)
	ACLA_055160	Uncharacterized protein. (496 aa)
	ACLA_010120	F-box domain protein. (212 aa)
	ACLA_012390	Protein transport protein Sec61 alpha subunit, putative. (445 aa)
	ACLA_034860	Protein translocase, putative. (70 aa)
	ACLA_096760	Signal sequence receptor alpha subunit, putative. (654 aa)
	ACLA_020420	Protein translocation complex componenet (Npl1), putative. (697 aa)
	ACLA_029760	Translocon protein Sec61beta, putative. (166 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_010120	ACLA_012390	A1CA21	A1CAP3	F-box domain protein.	Protein transport protein Sec61 alpha subunit, putative.	0.815
ACLA_010120	ACLA_020420	A1CA21	A1CNW4	F-box domain protein.	Protein translocation complex componenet (Npl1), putative.	0.893
ACLA_010120	ACLA_029760	A1CA21	A1CRH4	F-box domain protein.	Translocon protein Sec61beta, putative.	0.737
ACLA_010120	ACLA_034860	A1CA21	A1CJF9	F-box domain protein.	Protein translocase, putative.	0.894
ACLA_010120	ACLA_057610	A1CA21	A1C3W5	F-box domain protein.	Translocation protein (Sec66), putative.	0.893
ACLA_012390	ACLA_010120	A1CAP3	A1CA21	Protein transport protein Sec61 alpha subunit, putative.	F-box domain protein.	0.815
ACLA_012390	ACLA_020420	A1CAP3	A1CNW4	Protein transport protein Sec61 alpha subunit, putative.	Protein translocation complex componenet (Npl1), putative.	0.975
ACLA_012390	ACLA_029760	A1CAP3	A1CRH4	Protein transport protein Sec61 alpha subunit, putative.	Translocon protein Sec61beta, putative.	0.999
ACLA_012390	ACLA_034860	A1CAP3	A1CJF9	Protein transport protein Sec61 alpha subunit, putative.	Protein translocase, putative.	0.999
ACLA_012390	ACLA_055160	A1CAP3	A1C9E5	Protein transport protein Sec61 alpha subunit, putative.	Uncharacterized protein.	0.815
ACLA_012390	ACLA_057610	A1CAP3	A1C3W5	Protein transport protein Sec61 alpha subunit, putative.	Translocation protein (Sec66), putative.	0.994
ACLA_012390	ACLA_079600	A1CAP3	A1CSI9	Protein transport protein Sec61 alpha subunit, putative.	SRP receptor beta subunit (Srp102), putative.	0.672
ACLA_012390	ACLA_096760	A1CAP3	A1CMF5	Protein transport protein Sec61 alpha subunit, putative.	Signal sequence receptor alpha subunit, putative.	0.873
ACLA_020420	ACLA_010120	A1CNW4	A1CA21	Protein translocation complex componenet (Npl1), putative.	F-box domain protein.	0.893
ACLA_020420	ACLA_012390	A1CNW4	A1CAP3	Protein translocation complex componenet (Npl1), putative.	Protein transport protein Sec61 alpha subunit, putative.	0.975
ACLA_020420	ACLA_029760	A1CNW4	A1CRH4	Protein translocation complex componenet (Npl1), putative.	Translocon protein Sec61beta, putative.	0.938
ACLA_020420	ACLA_034860	A1CNW4	A1CJF9	Protein translocation complex componenet (Npl1), putative.	Protein translocase, putative.	0.952
ACLA_020420	ACLA_055160	A1CNW4	A1C9E5	Protein translocation complex componenet (Npl1), putative.	Uncharacterized protein.	0.893
ACLA_020420	ACLA_057610	A1CNW4	A1C3W5	Protein translocation complex componenet (Npl1), putative.	Translocation protein (Sec66), putative.	0.994
ACLA_020420	ACLA_079600	A1CNW4	A1CSI9	Protein translocation complex componenet (Npl1), putative.	SRP receptor beta subunit (Srp102), putative.	0.457