STRINGSTRING
ACLA_057570 ACLA_057570 ACLA_057680 ACLA_057680 ACLA_057760 ACLA_057760 ACLA_058040 ACLA_058040 ACLA_058190 ACLA_058190 ACLA_058220 ACLA_058220 ACLA_058850 ACLA_058850 ACLA_000540 ACLA_000540 ACLA_001170 ACLA_001170 ACLA_001180 ACLA_001180 ACLA_001250 ACLA_001250 ACLA_001580 ACLA_001580 ACLA_002030 ACLA_002030 ACLA_002060 ACLA_002060 fal1 fal1 ACLA_003560 ACLA_003560 ACLA_004090 ACLA_004090 dbp3 dbp3 ACLA_068050 ACLA_068050 ACLA_068380 ACLA_068380 ACLA_068400 ACLA_068400 ACLA_069120 ACLA_069120 ACLA_069460 ACLA_069460 ACLA_069510 ACLA_069510 dbp2 dbp2 ACLA_070340 ACLA_070340 ACLA_070400 ACLA_070400 ACLA_070470 ACLA_070470 ACLA_070760 ACLA_070760 LSM4 LSM4 ACLA_071030 ACLA_071030 ACLA_071700 ACLA_071700 ACLA_071710 ACLA_071710 ACLA_071950 ACLA_071950 ACLA_072010 ACLA_072010 ACLA_072530 ACLA_072530 ACLA_073520 ACLA_073520 dbp9 dbp9 ACLA_074090 ACLA_074090 ACLA_074190 ACLA_074190 ACLA_074950 ACLA_074950 ACLA_075010 ACLA_075010 esf2 esf2 ACLA_076020 ACLA_076020 ACLA_076030 ACLA_076030 ACLA_076140 ACLA_076140 cgrA cgrA ACLA_043960 ACLA_043960 ACLA_053540 ACLA_053540 ACLA_054560 ACLA_054560 ACLA_054750 ACLA_054750 ACLA_008870 ACLA_008870 ACLA_008920 ACLA_008920 ACLA_008930 ACLA_008930 ACLA_008990 ACLA_008990 ACLA_009010 ACLA_009010 ACLA_009190 ACLA_009190 TIF6 TIF6 ACLA_009510 ACLA_009510 ACLA_009840 ACLA_009840 ACLA_009850 ACLA_009850 ACLA_009890 ACLA_009890 ACLA_010280 ACLA_010280 ACLA_010660 ACLA_010660 ACLA_010990 ACLA_010990 ACLA_012520 ACLA_012520 ACLA_013690 ACLA_013690 ACLA_014070 ACLA_014070 dbp7 dbp7 ACLA_014200 ACLA_014200 ACLA_014540 ACLA_014540 ACLA_014690 ACLA_014690 ACLA_014790 ACLA_014790 SPB1 SPB1 ACLA_015290 ACLA_015290 ACLA_015620 ACLA_015620 ACLA_015830 ACLA_015830 ACLA_015850 ACLA_015850 ACLA_016450 ACLA_016450 ACLA_016480 ACLA_016480 ACLA_016510 ACLA_016510 ACLA_016520 ACLA_016520 ACLA_016990 ACLA_016990 ACLA_060510 ACLA_060510 ACLA_060670 ACLA_060670 ACLA_061080 ACLA_061080 pxr1 pxr1 ACLA_005920 ACLA_005920 LSM5 LSM5 ACLA_006140 ACLA_006140 ACLA_006190 ACLA_006190 ACLA_006380 ACLA_006380 ACLA_006550 ACLA_006550 ACLA_006990 ACLA_006990 ACLA_007150 ACLA_007150 ACLA_007350 ACLA_007350 ACLA_008170 ACLA_008170 lsm6 lsm6 ACLA_088090 ACLA_088090 ACLA_088160 ACLA_088160 ACLA_088200 ACLA_088200 jip5 jip5 ACLA_089140 ACLA_089140 ACLA_089150 ACLA_089150 ACLA_089280 ACLA_089280 ACLA_089860 ACLA_089860 ACLA_089880 ACLA_089880 ACLA_090060 ACLA_090060 ACLA_090130 ACLA_090130 ACLA_090570 ACLA_090570 ACLA_090780 ACLA_090780 ACLA_090910 ACLA_090910 ACLA_091190 ACLA_091190 ACLA_091460 ACLA_091460 ACLA_091590 ACLA_091590 ACLA_091800 ACLA_091800 efg1 efg1 ACLA_092080 ACLA_092080 ACLA_092400 ACLA_092400 ACLA_092480 ACLA_092480 grc3 grc3 ACLA_092670 ACLA_092670 ACLA_092840 ACLA_092840 ACLA_093100 ACLA_093100 ACLA_093170 ACLA_093170 nop16 nop16 ACLA_093550 ACLA_093550 ACLA_064950 ACLA_064950 ACLA_065320 ACLA_065320 ACLA_066660 ACLA_066660 ACLA_045150 ACLA_045150 ACLA_045570 ACLA_045570 ACLA_045660 ACLA_045660 ACLA_046470 ACLA_046470 ACLA_046810 ACLA_046810 ACLA_046850 ACLA_046850 ACLA_046880 ACLA_046880 ytm1 ytm1 ACLA_047200 ACLA_047200 nop7 nop7 ACLA_048310 ACLA_048310 ACLA_049620 ACLA_049620 ACLA_049750 ACLA_049750 ACLA_049830 ACLA_049830 ACLA_051120 ACLA_051120 ACLA_051210 ACLA_051210 ACLA_051250 ACLA_051250 has1 has1 ACLA_052430 ACLA_052430 ACLA_052640 ACLA_052640 ACLA_033330 ACLA_033330 ACLA_033500 ACLA_033500 ACLA_033830 ACLA_033830 ACLA_033960 ACLA_033960 ACLA_034270 ACLA_034270 ACLA_034280 ACLA_034280 ACLA_034330 ACLA_034330 ACLA_034530 ACLA_034530 ACLA_034600 ACLA_034600 ACLA_035670 ACLA_035670 nsa2 nsa2 ACLA_036440 ACLA_036440 ACLA_036700 ACLA_036700 ACLA_036980 ACLA_036980 ACLA_037030 ACLA_037030 ACLA_037260 ACLA_037260 ACLA_037370 ACLA_037370 ACLA_037520 ACLA_037520 ACLA_037680 ACLA_037680 ACLA_037720 ACLA_037720 ACLA_038620 ACLA_038620 dbp8 dbp8 nop9 nop9 ACLA_039710 ACLA_039710 ACLA_040180 ACLA_040180 ACLA_040330 ACLA_040330 spb4 spb4 rps0 rps0 nop58 nop58 ACLA_041200 ACLA_041200 ACLA_077800 ACLA_077800 ACLA_095240 ACLA_095240 ACLA_095490 ACLA_095490 loc1 loc1 rrp36 rrp36 ACLA_096270 ACLA_096270 ACLA_096580 ACLA_096580 ACLA_096780 ACLA_096780 ACLA_096940 ACLA_096940 ACLA_098200 ACLA_098200 ACLA_098310 ACLA_098310 ipi1 ipi1 ACLA_018420 ACLA_018420 ACLA_018570 ACLA_018570 ACLA_018780 ACLA_018780 ACLA_019230 ACLA_019230 rok1 rok1 ACLA_020320 ACLA_020320 ACLA_020330 ACLA_020330 drs1 drs1 ACLA_020850 ACLA_020850 ACLA_021120 ACLA_021120 ACLA_021200 ACLA_021200 ACLA_021580 ACLA_021580 ACLA_021710 ACLA_021710 ACLA_021850 ACLA_021850 ACLA_021970 ACLA_021970 ACLA_022250 ACLA_022250 ACLA_022400 ACLA_022400 ACLA_022570 ACLA_022570 ACLA_022740 ACLA_022740 ACLA_022890 ACLA_022890 ACLA_023940 ACLA_023940 LSM8 LSM8 ACLA_024390 ACLA_024390 ACLA_024420 ACLA_024420 ACLA_024520 ACLA_024520 ACLA_024760 ACLA_024760 ACLA_024970 ACLA_024970 ACLA_025010 ACLA_025010 ACLA_025090 ACLA_025090 ACLA_025240 ACLA_025240 ACLA_025650 ACLA_025650 ACLA_025690 ACLA_025690 utp25 utp25 ACLA_026260 ACLA_026260 erb1 erb1 ACLA_026480 ACLA_026480 ACLA_026800 ACLA_026800 TSR3 TSR3 ACLA_027970 ACLA_027970 rrp3 rrp3 ACLA_028290 ACLA_028290 ACLA_028350 ACLA_028350 ACLA_028760 ACLA_028760 ACLA_029000 ACLA_029000 ACLA_029210 ACLA_029210 ACLA_029250 ACLA_029250 ACLA_029310 ACLA_029310 NAT10 NAT10 ACLA_029550 ACLA_029550 ACLA_029570 ACLA_029570 ACLA_029830 ACLA_029830 ACLA_030280 ACLA_030280 ACLA_030320 ACLA_030320 ACLA_030370 ACLA_030370 ACLA_031710 ACLA_031710 ACLA_031780 ACLA_031780 ACLA_031800 ACLA_031800 ACLA_031980 ACLA_031980 ACLA_032220 ACLA_032220 ACLA_032230 ACLA_032230 ACLA_032520 ACLA_032520 ACLA_080150 ACLA_080150 mrh4 mrh4 ACLA_080390 ACLA_080390 ACLA_080700 ACLA_080700 ACLA_080820 ACLA_080820 ACLA_081010 ACLA_081010 ACLA_081020 ACLA_081020 ACLA_081040 ACLA_081040 ACLA_082430 ACLA_082430 ACLA_082490 ACLA_082490 ACLA_083030 ACLA_083030 mak5 mak5 ACLA_083610 ACLA_083610 ACLA_084030 ACLA_084030 ACLA_084370 ACLA_084370 dbp4 dbp4 dbp10 dbp10 ACLA_084930 ACLA_084930 ACLA_085890 ACLA_085890 ACLA_086170 ACLA_086170 ACLA_086260 ACLA_086260 ACLA_086550 ACLA_086550 ACLA_086580 ACLA_086580 utp10 utp10 ACLA_086830 ACLA_086830 ACLA_087370 ACLA_087370
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_057570rRNA maturation protein (Nop14), putative. (913 aa)
ACLA_057680Uncharacterized protein. (371 aa)
ACLA_057760RNA binding protein, putative. (536 aa)
ACLA_058040RNA-3'-phosphate cyclase family protein. (405 aa)
ACLA_058190Ribosome biogenesis protein, putative. (330 aa)
ACLA_058220Ribonuclease P complex subunit Pop2, putative. (312 aa)
ACLA_058850Ribosome biogenesis protein Noc4, putative. (548 aa)
ACLA_000540RNase3 domain protein. (228 aa)
ACLA_001170Nop10 family nucleolar RNA-binding protein. (66 aa)
ACLA_00118020S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (438 aa)
ACLA_001250DUF1665 domain protein. (298 aa)
ACLA_001580Uncharacterized protein. (284 aa)
ACLA_0020305'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1408 aa)
ACLA_002060Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative. (902 aa)
fal1ATP-dependent RNA helicase fal1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily. (399 aa)
ACLA_003560Nucleolar RNA methyltransferase (Nop2), putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (755 aa)
ACLA_004090RAN small monomeric GTPase (Ran), putative. (472 aa)
dbp3ATP-dependent RNA helicase dbp3; ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity); Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (503 aa)
ACLA_068050Cell division protein ftsj. (323 aa)
ACLA_068380Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
ACLA_068400Small nucleolar ribonucleoprotein complex subunit, putative. (623 aa)
ACLA_06912040S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (158 aa)
ACLA_06946040S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (150 aa)
ACLA_06951040S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (143 aa)
dbp2ATP-dependent RNA helicase dbp2; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. (549 aa)
ACLA_070340KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (354 aa)
ACLA_070400Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (522 aa)
ACLA_070470Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (655 aa)
ACLA_070760Pre-rRNA processing protein Rrp12, putative. (1276 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
ACLA_071030Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4925 aa)
ACLA_071700Pre-rRNA processing protein Tsr1, putative. (805 aa)
ACLA_071710Small nucleolar ribonucleoprotein complex subunit, putative. (528 aa)
ACLA_0719503' exoribonuclease family protein (Rrp42), putative. (391 aa)
ACLA_072010Cytidine and deoxycytidylate deaminase zinc-binding domain protein. (217 aa)
ACLA_072530Exonuclease, putative. (746 aa)
ACLA_073520Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (566 aa)
dbp9ATP-dependent RNA helicase dbp9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. (621 aa)
ACLA_074090Ribosome biogenesis protein (Bms1), putative. (1181 aa)
ACLA_074190U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
ACLA_0749503' exoribonuclease family protein. (319 aa)
ACLA_075010rRNA biogenesis protein RRP5, putative. (1819 aa)
esf2Pre-rRNA-processing protein esf2; Involved in the small subunit (SSU) processome assembly and function, and in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2 (By similarity); Belongs to the ESF2/ABP1 family. (368 aa)
ACLA_076020Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (692 aa)
ACLA_07603060S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (207 aa)
ACLA_076140Uncharacterized protein. (924 aa)
cgrArRNA-processing protein cgrA; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit; Belongs to the CGR1 family. (113 aa)
ACLA_043960Uncharacterized protein. (227 aa)
ACLA_053540AAA family ATPase, putative. (750 aa)
ACLA_05456060S ribosomal protein L7. (251 aa)
ACLA_054750Ribosome associated DnaJ chaperone Zuotin, putative. (447 aa)
ACLA_008870Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (177 aa)
ACLA_00892060S ribosomal protein L23. (154 aa)
ACLA_00893025S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (286 aa)
ACLA_008990Centromere/microtubule binding protein cbf5. (487 aa)
ACLA_009010DUF2431 domain-containing protein. (398 aa)
ACLA_009190RNA processing factor 1. (436 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
ACLA_009510Uncharacterized protein. (297 aa)
ACLA_009840Ribosome biogenesis GTPase Lsg1, putative. (679 aa)
ACLA_009850Low-temperature viability protein ltv1. (497 aa)
ACLA_009890RIX1 domain-containing protein. (786 aa)
ACLA_010280ABC transporter, putative. (618 aa)
ACLA_01066060S ribosome biogenesis protein Sqt1, putative. (512 aa)
ACLA_010990Ankyrin repeat protein (Yar1), putative. (238 aa)
ACLA_01252080 kD MCM3-associated protein. (1238 aa)
ACLA_013690Uncharacterized protein. (1125 aa)
ACLA_014070Uncharacterized protein. (508 aa)
dbp7ATP-dependent RNA helicase dbp7; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. (755 aa)
ACLA_014200Ribonuclease P protein subunit. (237 aa)
ACLA_014540Ribosomal protein S19, putative; Belongs to the universal ribosomal protein uS19 family. (99 aa)
ACLA_014690Pre-mRNA splicing factor RNA helicase (Prp43), putative. (772 aa)
ACLA_014790RIO1 family protein kinase, putative. (422 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (796 aa)
ACLA_015290rRNA processing protein (Ebp2), putative. (371 aa)
ACLA_015620U6 small nuclear ribonucleoprotein (Lsm3), putative. (74 aa)
ACLA_015830Uncharacterized protein. (403 aa)
ACLA_015850Uncharacterized protein. (404 aa)
ACLA_016450Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (248 aa)
ACLA_016480Uncharacterized protein. (329 aa)
ACLA_016510Ribosome biogenesis protein Ria1, putative. (1086 aa)
ACLA_0165203'-5' exoribonuclease (Csl4), putative. (253 aa)
ACLA_016990HIT finger domain protein, putative. (398 aa)
ACLA_060510SnoRNA binding protein, putative. (770 aa)
ACLA_060670rRNA processing protein Bystin, putative. (516 aa)
ACLA_061080RNAse III, putative. (160 aa)
pxr1Protein pxr1; Involved in rRNA-processing at A0, A1 and A2 sites and regulates negatively telomerase; Belongs to the PINX1 family. (291 aa)
ACLA_005920Uncharacterized protein. (222 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
ACLA_006140Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (220 aa)
ACLA_006190Ribosomal protein S28e. (68 aa)
ACLA_006380Conserved hypothetical portein. (523 aa)
ACLA_006550rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (393 aa)
ACLA_00699040S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
ACLA_007150Uncharacterized protein. (404 aa)
ACLA_007350DUF890 domain protein. (436 aa)
ACLA_008170BNR/Asp-box repeat domain protein. (365 aa)
lsm6U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] (78 aa)
ACLA_088090DUF343 domain protein. (145 aa)
ACLA_088160Methyltransferase, putative. (279 aa)
ACLA_088200rRNA processing protein (Rrp20), putative. (260 aa)
jip5WD repeat-containing protein jip5. (414 aa)
ACLA_089140Exonuclease, putative. (311 aa)
ACLA_089150Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (429 aa)
ACLA_089280Pre-rRNA processing protein Esf1, putative. (740 aa)
ACLA_089860Pre-rRNA processing protein, putative. (197 aa)
ACLA_089880WD repeat protein. (720 aa)
ACLA_090060Uncharacterized protein. (497 aa)
ACLA_090130C2H2 finger domain protein, putative. (441 aa)
ACLA_090570Small nucleolar ribonucleoprotein complex subunit, putative. (983 aa)
ACLA_090780Exosome complex endonuclease 1/ribosomal RNA processing protein, putative. (269 aa)
ACLA_09091040S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
ACLA_091190DUF652 domain protein. (201 aa)
ACLA_091460Uncharacterized protein. (215 aa)
ACLA_091590BTB/POZ domain protein. (239 aa)
ACLA_091800Ribosomal protein L34 protein, putative. (185 aa)
efg1rRNA-processing protein efg1; Involved in rRNA processing; Belongs to the EFG1 family. (315 aa)
ACLA_09208060S ribosomal protein L24b. (188 aa)
ACLA_092400Uncharacterized protein. (245 aa)
ACLA_092480Exosome complex exonuclease Rrp40, putative. (280 aa)
grc3Polynucleotide 5'-hydroxyl-kinase grc3; Polynucleotide 5'-kinase involved in rRNA processing. Belongs to the Clp1 family. NOL9/GRC3 subfamily. (839 aa)
ACLA_092670Ribosomal_S10 domain-containing protein. (116 aa)
ACLA_092840Nuclear protein (Sgd1), putative. (865 aa)
ACLA_093100Small nucleolar ribonucleoprotein complex subunit Utp15, putative. (542 aa)
ACLA_093170Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (353 aa)
nop16Nucleolar protein 16; Involved in the biogenesis of the 60S ribosomal subunit. (241 aa)
ACLA_093550Exosome complex subunit Rrp46, putative. (249 aa)
ACLA_064950WD domain protein. (930 aa)
ACLA_065320Uncharacterized protein. (306 aa)
ACLA_066660RNA exonuclease, putative. (424 aa)
ACLA_045150U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (715 aa)
ACLA_045570Ribosome biogenesis (Nop4), putative. (735 aa)
ACLA_045660Ribosomal biogenesis protein Gar2. (489 aa)
ACLA_046470ATP dependent RNA helicase (Dob1), putative. (1082 aa)
ACLA_046810Small nucleolar ribonucleoprotein complex subunit, putative. (617 aa)
ACLA_046850Small nucleolar ribonucleoprotein complex subunit, putative. (978 aa)
ACLA_04688060S ribosome biogenesis protein Mak11, putative. (515 aa)
ytm1Ribosome biogenesis protein ytm1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (488 aa)
ACLA_047200Nuclear transport factor 2 (NTF2) domain protein. (162 aa)
nop7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (680 aa)
ACLA_048310Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (560 aa)
ACLA_049620DNA binding protein SART-1, putative. (668 aa)
ACLA_049750Small nucleolar ribonucleoprotein complex component (Utp5), putative. (851 aa)
ACLA_049830Uncharacterized protein. (196 aa)
ACLA_051120TPR domain protein. (400 aa)
ACLA_051210Uncharacterized protein. (388 aa)
ACLA_051250Exosome complex exonuclease exoribonuclease (Rrp44), putative; Belongs to the RNR ribonuclease family. (1032 aa)
has1ATP-dependent RNA helicase has1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (625 aa)
ACLA_052430RNA methyltransferase, TrmH family family. (495 aa)
ACLA_052640H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (205 aa)
ACLA_033330C2H2 finger domain protein, putative. (491 aa)
ACLA_033500U3 small nucleolar RNA-associated protein 22. (1075 aa)
ACLA_033830Exosome complex exonuclease Rrp4, putative. (387 aa)
ACLA_033960RNA processing protein Emg1, putative. (254 aa)
ACLA_034270RNA binding protein. (329 aa)
ACLA_034280Uncharacterized protein. (287 aa)
ACLA_034330Exosome-associated protein, putative. (249 aa)
ACLA_034530WD repeat protein. (569 aa)
ACLA_03460040S ribosomal protein S27. (82 aa)
ACLA_035670Ribonucleoprotein, chloroplast. (514 aa)
nsa2Ribosome biogenesis protein nsa2; Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles (By similarity). (265 aa)
ACLA_03644060S ribosomal protein L35a. (109 aa)
ACLA_036700rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (622 aa)
ACLA_036980Regulatory protein SUAPRGA1. (310 aa)
ACLA_037030HAD_SAK_1 domain-containing protein. (564 aa)
ACLA_037260PDCD2_C domain protein, putative. (428 aa)
ACLA_037370Pre-rRNA processing nucleolar protein Sik1, putative. (515 aa)
ACLA_037520Uncharacterized protein. (396 aa)
ACLA_037680AB hydrolase-1 domain-containing protein. (342 aa)
ACLA_037720Exosome complex exonuclease Rrp6, putative. (778 aa)
ACLA_03862040S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
dbp8ATP-dependent RNA helicase dbp8; ATP-binding RNA helicase involved in 40S ribosomal subunit biogenesis and is required for the normal formation of 18S rRNAs through pre-rRNA processing at A0, A1 and A2 sites. Required for vegetative growth (By similarity); Belongs to the DEAD box helicase family. DDX49/DBP8 subfamily. (523 aa)
nop9Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family. (692 aa)
ACLA_039710RNA exonuclease Rex2, putative. (217 aa)
ACLA_040180RNA exonuclease Rex3, putative. (649 aa)
ACLA_040330Protein arginine methyltransferase RmtB; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (542 aa)
spb4ATP-dependent rRNA helicase spb4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. (639 aa)
rps040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (298 aa)
nop58Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family. (592 aa)
ACLA_041200Uncharacterized protein. (162 aa)
ACLA_077800Lactonohydrolase, putative. (444 aa)
ACLA_095240Nucleolus protein required for cell viability, putative. (242 aa)
ACLA_095490HLA class III protein Dom3z. (356 aa)
loc160S ribosomal subunit assembly/export protein loc1; Required for efficient assembly and nuclear export of the 60S ribosomal subunit. (190 aa)
rrp36rRNA biogenesis protein rrp36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity). (379 aa)
ACLA_096270DEAH-box RNA helicase (Dhr1), putative. (1219 aa)
ACLA_096580Protein MAK16; Belongs to the MAK16 family. (323 aa)
ACLA_096780Ribosomal protein L14. (149 aa)
ACLA_096940mRNA-nucleus export ATPase (Elf1), putative. (1108 aa)
ACLA_098200Ribonuclease P complex subunit Pop1, putative. (896 aa)
ACLA_0983103' exoribonuclease family protein. (416 aa)
ipi1Pre-rRNA-processing protein ipi1; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. (357 aa)
ACLA_018420NOL1/NOP2/sun domain protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (565 aa)
ACLA_018570DEAD/DEAH box helicase, putative. (848 aa)
ACLA_018780Pseudouridine synthase TruD/Pus7, putative. (741 aa)
ACLA_019230Ribosome assembly protein Noc2, putative. (785 aa)
rok1ATP-dependent RNA helicase rok1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (738 aa)
ACLA_020320Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (747 aa)
ACLA_02033040S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (215 aa)
drs1ATP-dependent RNA helicase drs1; ATP-binding RNA helicase involved in ribosome assembly. (826 aa)
ACLA_020850U3 small nucleolar RNA-associated protein Utp11, putative. (303 aa)
ACLA_021120Small nuclear ribonucleoprotein (LSM7), putative. (140 aa)
ACLA_021200Fibrillarin. (318 aa)
ACLA_021580snoRNP assembly factor Naf1, putative. (677 aa)
ACLA_0217105'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1043 aa)
ACLA_021850Small nuclear ribonucleoprotein complex protein Nhp2, putative. (233 aa)
ACLA_021970Uncharacterized protein. (457 aa)
ACLA_022250Urb2 domain-containing protein. (1482 aa)
ACLA_022400U3 small nucleolar ribonucleoprotein protein IMP4, putative. (299 aa)
ACLA_02257060S ribosomal protein L5, putative. (300 aa)
ACLA_02274060S ribosomal protein L3. (406 aa)
ACLA_022890RNA binding protein Ligatin/Tma64, putative. (668 aa)
ACLA_023940Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
ACLA_024390Sas10/Utp3 family protein. (657 aa)
ACLA_02442060S ribosomal protein L6. (197 aa)
ACLA_024520Ribosomal RNA processing protein, putative. (332 aa)
ACLA_024760CCAAT-box-binding transcription factor. (1104 aa)
ACLA_024970GTP-binding protein. (549 aa)
ACLA_02501060S ribosomal protein L35. (192 aa)
ACLA_025090PUM-HD domain-containing protein. (699 aa)
ACLA_025240RNase L inhibitor of the ABC superfamily, putative. (633 aa)
ACLA_025650Uncharacterized protein. (233 aa)
ACLA_025690Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (181 aa)
utp25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (693 aa)
ACLA_026260AAA family ATPase/60S ribosome export protein Rix7, putative. (738 aa)
erb1Ribosome biogenesis protein erb1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (788 aa)
ACLA_026480Lactonohydrolase, putative. (411 aa)
ACLA_026800Exportin KapK. (1072 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (375 aa)
ACLA_02797060S ribosome biogenesis protein Rrp14, putative. (533 aa)
rrp3ATP-dependent rRNA helicase rrp3; ATP-dependent rRNA helicase required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA. (473 aa)
ACLA_028290Ribosome biogenesis protein Ssf2, putative. (442 aa)
ACLA_028350Small nucleolar ribonucleoprotein complex subunit (SOF1), putative. (466 aa)
ACLA_028760TBP associated factor (Mot1), putative. (1901 aa)
ACLA_02900040S ribosomal protein S3, putative; Belongs to the universal ribosomal protein uS3 family. (267 aa)
ACLA_029210Peptidyl-prolyl cis-trans isomerase. (126 aa)
ACLA_029250Ribosome biogenesis protein Kri1. (627 aa)
ACLA_02931040S ribosomal protein S19. (148 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1068 aa)
ACLA_029550mRNA export factor mex67. (661 aa)
ACLA_02957060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
ACLA_029830Pre-rRNA processing protein Mrd1, putative. (822 aa)
ACLA_030280Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive. (959 aa)
ACLA_03032030S ribosomal protein S7, putative. (354 aa)
ACLA_03037040S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (200 aa)
ACLA_031710WD domain protein. (959 aa)
ACLA_031780rRNA processing protein Pwp1, putative. (545 aa)
ACLA_031800rRNA processing protein, putative. (329 aa)
ACLA_031980RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (469 aa)
ACLA_03222060S ribosome biogenesis protein Brx1, putative. (357 aa)
ACLA_032230F-box domain protein. (371 aa)
ACLA_032520WD repeat protein. (516 aa)
ACLA_080150U3 small nucleolar ribonucleoprotein subunit (Imp3), putative. (188 aa)
mrh4ATP-dependent RNA helicase mrh4, mitochondrial; ATP-binding RNA helicase involved in mitochondrial RNA metabolism. Required for maintenance of mitochondrial DNA (By similarity); Belongs to the DEAD box helicase family. MRH4 subfamily. (632 aa)
ACLA_080390Uncharacterized protein. (883 aa)
ACLA_080700Exosome complex endonuclease 2/ribosomal RNA processing protein, putative. (292 aa)
ACLA_080820Eukaryotic translation initiation factor 5, putative. (423 aa)
ACLA_08101060S ribosomal protein L30, putative. (106 aa)
ACLA_08102060S ribosomal protein L10. (223 aa)
ACLA_081040ATP-dependent RNA helicase (Hrh1), putative. (826 aa)
ACLA_082430HEAT repeat protein (DRIM), putative. (2621 aa)
ACLA_082490DNA polymerase V, putative. (989 aa)
ACLA_083030Transcription factor AATF/Che-1, putative. (579 aa)
mak5ATP-dependent RNA helicase mak5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. (774 aa)
ACLA_083610Cellular morphogenesis protein (Bud22), putative. (453 aa)
ACLA_084030Ribosome biogenesis protein (Rrb1), putative. (496 aa)
ACLA_084370Rpp14 family family. (218 aa)
dbp4ATP-dependent RNA helicase dbp4; ATP-dependent RNA helicase required for ribosome biogenesis. Involved in the release of U14 snoRNA in pre-ribosomal complexes. Required for pre-rRNA cleavage at site A2 (By similarity). (823 aa)
dbp10ATP-dependent RNA helicase dbp10; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (935 aa)
ACLA_084930Ribosomal protein L26. (133 aa)
ACLA_085890Uncharacterized protein. (658 aa)
ACLA_086170C2H2 finger domain protein, putative. (111 aa)
ACLA_08626060S ribosomal protein L7a. (266 aa)
ACLA_086550GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (207 aa)
ACLA_086580SBDS domain-containing protein. (112 aa)
utp10U3 small nucleolar RNA-associated protein 10; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity). (1819 aa)
ACLA_086830UPF0023 family protein. (343 aa)
ACLA_087370U3 small nucleolar ribonucleoprotein protein Lcp5, putative. (385 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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