STRINGSTRING
ACLA_020330 ACLA_020330 drs1 drs1 ACLA_022570 ACLA_022570 ACLA_024420 ACLA_024420 ACLA_025650 ACLA_025650 ACLA_028290 ACLA_028290 ACLA_029310 ACLA_029310 ACLA_029570 ACLA_029570 ACLA_029830 ACLA_029830 ACLA_030320 ACLA_030320 ACLA_032220 ACLA_032220 ACLA_032230 ACLA_032230 ACLA_032520 ACLA_032520 ACLA_080820 ACLA_080820 ACLA_086830 ACLA_086830 ACLA_081020 ACLA_081020 ACLA_057680 ACLA_057680 ACLA_058190 ACLA_058190 ACLA_002060 ACLA_002060 ACLA_069120 ACLA_069120 ACLA_069460 ACLA_069460 ACLA_071030 ACLA_071030 ACLA_075010 ACLA_075010 ACLA_076030 ACLA_076030 ACLA_008920 ACLA_008920 TIF6 TIF6 ACLA_009840 ACLA_009840 ACLA_010660 ACLA_010660 ACLA_014540 ACLA_014540 ACLA_016450 ACLA_016450 ACLA_016510 ACLA_016510 ACLA_006190 ACLA_006190 ACLA_089140 ACLA_089140 ACLA_089150 ACLA_089150 ACLA_093170 ACLA_093170 ACLA_065320 ACLA_065320 ACLA_034600 ACLA_034600 ACLA_036980 ACLA_036980 spb4 spb4 rps0 rps0
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_02033040S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (215 aa)
drs1ATP-dependent RNA helicase drs1; ATP-binding RNA helicase involved in ribosome assembly. (826 aa)
ACLA_02257060S ribosomal protein L5, putative. (300 aa)
ACLA_02442060S ribosomal protein L6. (197 aa)
ACLA_025650Uncharacterized protein. (233 aa)
ACLA_028290Ribosome biogenesis protein Ssf2, putative. (442 aa)
ACLA_02931040S ribosomal protein S19. (148 aa)
ACLA_02957060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
ACLA_029830Pre-rRNA processing protein Mrd1, putative. (822 aa)
ACLA_03032030S ribosomal protein S7, putative. (354 aa)
ACLA_03222060S ribosome biogenesis protein Brx1, putative. (357 aa)
ACLA_032230F-box domain protein. (371 aa)
ACLA_032520WD repeat protein. (516 aa)
ACLA_080820Eukaryotic translation initiation factor 5, putative. (423 aa)
ACLA_086830UPF0023 family protein. (343 aa)
ACLA_08102060S ribosomal protein L10. (223 aa)
ACLA_057680Uncharacterized protein. (371 aa)
ACLA_058190Ribosome biogenesis protein, putative. (330 aa)
ACLA_002060Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative. (902 aa)
ACLA_06912040S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (158 aa)
ACLA_06946040S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (150 aa)
ACLA_071030Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4925 aa)
ACLA_075010rRNA biogenesis protein RRP5, putative. (1819 aa)
ACLA_07603060S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (207 aa)
ACLA_00892060S ribosomal protein L23. (154 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
ACLA_009840Ribosome biogenesis GTPase Lsg1, putative. (679 aa)
ACLA_01066060S ribosome biogenesis protein Sqt1, putative. (512 aa)
ACLA_014540Ribosomal protein S19, putative; Belongs to the universal ribosomal protein uS19 family. (99 aa)
ACLA_016450Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (248 aa)
ACLA_016510Ribosome biogenesis protein Ria1, putative. (1086 aa)
ACLA_006190Ribosomal protein S28e. (68 aa)
ACLA_089140Exonuclease, putative. (311 aa)
ACLA_089150Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (429 aa)
ACLA_093170Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (353 aa)
ACLA_065320Uncharacterized protein. (306 aa)
ACLA_03460040S ribosomal protein S27. (82 aa)
ACLA_036980Regulatory protein SUAPRGA1. (310 aa)
spb4ATP-dependent rRNA helicase spb4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. (639 aa)
rps040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (298 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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