(18 nodes) Nuclear body network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_083530	Ubiquitin-protein ligase Ufd4, putative. (1817 aa)
	ACLA_058900	CCCH zinc finger protein. (452 aa)
	ACLA_069840	RING finger protein. (846 aa)
	ACLA_072770	Arsenite resistance protein Ars2, putative. (916 aa)
	ACLA_074050	CCCH zinc finger and RRM domain protein. (731 aa)
	ACLA_010380	RNP domain protein. (378 aa)
	ACLA_011810	zf-C3H1 domain-containing protein. (1179 aa)
	ACLA_005480	YT521-B-like splicing factor, putative. (530 aa)
	ACLA_007010	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (583 aa)
	ACLA_035860	Phosphoinositide phospholipase C. (649 aa)
	ACLA_098480	tRNA-splicing endonuclease, putative. (2137 aa)
	ACLA_019990	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (598 aa)
	ACLA_022180	Phosphoinositide phospholipase C. (1041 aa)
	ACLA_026010	RNP domain protein. (188 aa)
	ACLA_029830	Pre-rRNA processing protein Mrd1, putative. (822 aa)
	ACLA_079420	Pre-mRNA splicing factor (Srp1), putative. (217 aa)
	ACLA_084840	Uncharacterized protein. (445 aa)
	ACLA_084970	Cation channel family transporter, putative. (1107 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_005480	ACLA_010380	A1CD65	A1CA44	YT521-B-like splicing factor, putative.	RNP domain protein.	0.436
ACLA_005480	ACLA_011810	A1CD65	A1CAI6	YT521-B-like splicing factor, putative.	zf-C3H1 domain-containing protein.	0.791
ACLA_005480	ACLA_019990	A1CD65	A1CNS3	YT521-B-like splicing factor, putative.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.861
ACLA_005480	ACLA_026010	A1CD65	A1CQG3	YT521-B-like splicing factor, putative.	RNP domain protein.	0.640
ACLA_005480	ACLA_058900	A1CD65	A1C488	YT521-B-like splicing factor, putative.	CCCH zinc finger protein.	0.455
ACLA_005480	ACLA_072770	A1CD65	A1C773	YT521-B-like splicing factor, putative.	Arsenite resistance protein Ars2, putative.	0.457
ACLA_005480	ACLA_074050	A1CD65	A1C7J7	YT521-B-like splicing factor, putative.	CCCH zinc finger and RRM domain protein.	0.462
ACLA_007010	ACLA_019990	A1CDL5	A1CNS3	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.898
ACLA_007010	ACLA_026010	A1CDL5	A1CQG3	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	RNP domain protein.	0.959
ACLA_007010	ACLA_072770	A1CDL5	A1C773	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Arsenite resistance protein Ars2, putative.	0.590
ACLA_007010	ACLA_079420	A1CDL5	A1CSH1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Pre-mRNA splicing factor (Srp1), putative.	0.593
ACLA_010380	ACLA_005480	A1CA44	A1CD65	RNP domain protein.	YT521-B-like splicing factor, putative.	0.436
ACLA_011810	ACLA_005480	A1CAI6	A1CD65	zf-C3H1 domain-containing protein.	YT521-B-like splicing factor, putative.	0.791
ACLA_011810	ACLA_019990	A1CAI6	A1CNS3	zf-C3H1 domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.923
ACLA_011810	ACLA_026010	A1CAI6	A1CQG3	zf-C3H1 domain-containing protein.	RNP domain protein.	0.624
ACLA_011810	ACLA_058900	A1CAI6	A1C488	zf-C3H1 domain-containing protein.	CCCH zinc finger protein.	0.579
ACLA_011810	ACLA_072770	A1CAI6	A1C773	zf-C3H1 domain-containing protein.	Arsenite resistance protein Ars2, putative.	0.496
ACLA_011810	ACLA_074050	A1CAI6	A1C7J7	zf-C3H1 domain-containing protein.	CCCH zinc finger and RRM domain protein.	0.701
ACLA_019990	ACLA_005480	A1CNS3	A1CD65	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	YT521-B-like splicing factor, putative.	0.861
ACLA_019990	ACLA_007010	A1CNS3	A1CDL5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.898