STRINGSTRING
ACLA_031710 ACLA_031710 ACLA_002060 ACLA_002060 ACLA_003610 ACLA_003610 ACLA_068400 ACLA_068400 ACLA_070400 ACLA_070400 ACLA_060510 ACLA_060510 ACLA_089880 ACLA_089880 ACLA_091080 ACLA_091080 ACLA_065320 ACLA_065320 ACLA_045150 ACLA_045150 ACLA_045500 ACLA_045500 ACLA_045510 ACLA_045510 ACLA_045660 ACLA_045660 ACLA_049750 ACLA_049750 has1 has1 ACLA_058040 ACLA_058040 ACLA_057570 ACLA_057570 ACLA_034270 ACLA_034270 ACLA_034280 ACLA_034280 ACLA_037520 ACLA_037520 dbp8 dbp8 spb4 spb4 rrp36 rrp36 ACLA_019230 ACLA_019230 rok1 rok1 ACLA_022400 ACLA_022400 ACLA_024760 ACLA_024760 ACLA_025540 ACLA_025540 ACLA_026060 ACLA_026060 ACLA_027440 ACLA_027440 NAT10 NAT10 ACLA_029570 ACLA_029570 ACLA_058850 ACLA_058850 ACLA_080150 ACLA_080150 ACLA_083030 ACLA_083030 ACLA_033500 ACLA_033500
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_031710WD domain protein. (959 aa)
ACLA_002060Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative. (902 aa)
ACLA_003610Fungal specific transcription factor domain protein. (726 aa)
ACLA_068400Small nucleolar ribonucleoprotein complex subunit, putative. (623 aa)
ACLA_070400Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (522 aa)
ACLA_060510SnoRNA binding protein, putative. (770 aa)
ACLA_089880WD repeat protein. (720 aa)
ACLA_091080F-box domain protein. (952 aa)
ACLA_065320Uncharacterized protein. (306 aa)
ACLA_045150U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (715 aa)
ACLA_045500Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (365 aa)
ACLA_045510Fungal specific transcription factor domain protein. (799 aa)
ACLA_045660Ribosomal biogenesis protein Gar2. (489 aa)
ACLA_049750Small nucleolar ribonucleoprotein complex component (Utp5), putative. (851 aa)
has1ATP-dependent RNA helicase has1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (625 aa)
ACLA_058040RNA-3'-phosphate cyclase family protein. (405 aa)
ACLA_057570rRNA maturation protein (Nop14), putative. (913 aa)
ACLA_034270RNA binding protein. (329 aa)
ACLA_034280Uncharacterized protein. (287 aa)
ACLA_037520Uncharacterized protein. (396 aa)
dbp8ATP-dependent RNA helicase dbp8; ATP-binding RNA helicase involved in 40S ribosomal subunit biogenesis and is required for the normal formation of 18S rRNAs through pre-rRNA processing at A0, A1 and A2 sites. Required for vegetative growth (By similarity); Belongs to the DEAD box helicase family. DDX49/DBP8 subfamily. (523 aa)
spb4ATP-dependent rRNA helicase spb4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. (639 aa)
rrp36rRNA biogenesis protein rrp36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity). (379 aa)
ACLA_019230Ribosome assembly protein Noc2, putative. (785 aa)
rok1ATP-dependent RNA helicase rok1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (738 aa)
ACLA_022400U3 small nucleolar ribonucleoprotein protein IMP4, putative. (299 aa)
ACLA_024760CCAAT-box-binding transcription factor. (1104 aa)
ACLA_025540Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (296 aa)
ACLA_026060Ribosomal protein S23 (S12); Belongs to the universal ribosomal protein uS12 family. (145 aa)
ACLA_027440RING finger domain protein. (745 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1068 aa)
ACLA_02957060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
ACLA_058850Ribosome biogenesis protein Noc4, putative. (548 aa)
ACLA_080150U3 small nucleolar ribonucleoprotein subunit (Imp3), putative. (188 aa)
ACLA_083030Transcription factor AATF/Che-1, putative. (579 aa)
ACLA_033500U3 small nucleolar RNA-associated protein 22. (1075 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.