(7 nodes) Pwp2p-containing subcomplex of 90S preribosome network (Aspergillus clavatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_049750	Small nucleolar ribonucleoprotein complex component (Utp5), putative. (851 aa)
	ACLA_002060	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative. (902 aa)
	ACLA_068400	Small nucleolar ribonucleoprotein complex subunit, putative. (623 aa)
	ACLA_060510	SnoRNA binding protein, putative. (770 aa)
	ACLA_091080	F-box domain protein. (952 aa)
	ACLA_031710	WD domain protein. (959 aa)
	ACLA_037520	Uncharacterized protein. (396 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_002060	ACLA_031710	A1C527	A1CS17	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	WD domain protein.	0.999
ACLA_002060	ACLA_037520	A1C527	A1CK71	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	Uncharacterized protein.	0.999
ACLA_002060	ACLA_049750	A1C527	A1CHZ8	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	0.999
ACLA_002060	ACLA_060510	A1C527	A1CC39	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	SnoRNA binding protein, putative.	0.999
ACLA_002060	ACLA_068400	A1C527	A1C5Z2	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.999
ACLA_031710	ACLA_002060	A1CS17	A1C527	WD domain protein.	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	0.999
ACLA_031710	ACLA_037520	A1CS17	A1CK71	WD domain protein.	Uncharacterized protein.	0.999
ACLA_031710	ACLA_049750	A1CS17	A1CHZ8	WD domain protein.	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	0.999
ACLA_031710	ACLA_060510	A1CS17	A1CC39	WD domain protein.	SnoRNA binding protein, putative.	0.999
ACLA_031710	ACLA_068400	A1CS17	A1C5Z2	WD domain protein.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.999
ACLA_037520	ACLA_002060	A1CK71	A1C527	Uncharacterized protein.	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	0.999
ACLA_037520	ACLA_031710	A1CK71	A1CS17	Uncharacterized protein.	WD domain protein.	0.999
ACLA_037520	ACLA_049750	A1CK71	A1CHZ8	Uncharacterized protein.	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	0.998
ACLA_037520	ACLA_060510	A1CK71	A1CC39	Uncharacterized protein.	SnoRNA binding protein, putative.	0.999
ACLA_037520	ACLA_068400	A1CK71	A1C5Z2	Uncharacterized protein.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.999
ACLA_049750	ACLA_002060	A1CHZ8	A1C527	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	Small nucleolar ribonucleoprotein complex subunit (Pwp2), putative.	0.999
ACLA_049750	ACLA_031710	A1CHZ8	A1CS17	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	WD domain protein.	0.999
ACLA_049750	ACLA_037520	A1CHZ8	A1CK71	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	Uncharacterized protein.	0.998
ACLA_049750	ACLA_060510	A1CHZ8	A1CC39	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	SnoRNA binding protein, putative.	0.999
ACLA_049750	ACLA_068400	A1CHZ8	A1C5Z2	Small nucleolar ribonucleoprotein complex component (Utp5), putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.999