STRINGSTRING
ACLA_052410 ACLA_052410 ACLA_052020 ACLA_052020 ACLA_016930 ACLA_016930 dus3 dus3 pan3 pan3 ACLA_092660 ACLA_092660 ACLA_031620 ACLA_031620 ACLA_012790 ACLA_012790 ACLA_010070 ACLA_010070 ACLA_074050 ACLA_074050 ACLA_058900 ACLA_058900 ACLA_057710 ACLA_057710 ACLA_062120 ACLA_062120 ACLA_061920 ACLA_061920 ACLA_033580 ACLA_033580 ACLA_041810 ACLA_041810
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_052410C-x8-C-x5-C-x3-H type zinc finger protein. (569 aa)
ACLA_052020CCCH zinc finger and SMR domain protein. (734 aa)
ACLA_016930CCCH finger DNA binding protein, putative. (342 aa)
dus3tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs (By similarity). (728 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein pab1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (659 aa)
ACLA_092660CCCH zinc finger domain protein. (537 aa)
ACLA_031620mRNA cleavage and polyadenylation specificity factor complex subunit, putative. (255 aa)
ACLA_012790CCCH and RING finger protein (Znf183), putative. (334 aa)
ACLA_010070Cell cycle control protein (Cwf2), putative. (418 aa)
ACLA_074050CCCH zinc finger and RRM domain protein. (731 aa)
ACLA_058900CCCH zinc finger protein. (452 aa)
ACLA_057710CCCH zinc finger protein. (571 aa)
ACLA_062120CCCH zinc finger DNA binding protein. (426 aa)
ACLA_061920U2 auxiliary factor small subunit, putative. (209 aa)
ACLA_033580Spindle poison sensitivity protein Scp3, putative. (541 aa)
ACLA_041810C-x8-C-x5-C-x3-H type zinc finger protein. (1141 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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