STRINGSTRING
ACLA_049460 ACLA_049460 ACLA_021120 ACLA_021120 ACLA_023090 ACLA_023090 LSM8 LSM8 LSM1 LSM1 ACLA_058360 ACLA_058360 ACLA_081370 ACLA_081370 LSM4 LSM4 ACLA_072480 ACLA_072480 ACLA_074190 ACLA_074190 ACLA_074440 ACLA_074440 ACLA_015620 ACLA_015620 ACLA_015740 ACLA_015740 LSM5 LSM5 ACLA_007670 ACLA_007670 lsm6 lsm6 ACLA_089530 ACLA_089530 ACLA_090550 ACLA_090550 ACLA_047110 ACLA_047110
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_049460Small nuclear ribonucleoprotein Sm D3. (136 aa)
ACLA_021120Small nuclear ribonucleoprotein (LSM7), putative. (140 aa)
ACLA_023090G2/M phase checkpoint control protein Sum2, putative. (574 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (177 aa)
ACLA_058360Small nuclear ribonucleoprotein G. (78 aa)
ACLA_081370Mechanosensitive ion channel protein. (955 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
ACLA_072480Mechanosensitive ion channel protein. (948 aa)
ACLA_074190U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
ACLA_074440LSM domain protein. (88 aa)
ACLA_015620U6 small nuclear ribonucleoprotein (Lsm3), putative. (74 aa)
ACLA_015740Small nuclear ribonucleoprotein Sm D2. (115 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
ACLA_007670Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
lsm6U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] (78 aa)
ACLA_089530Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
ACLA_090550LSM domain protein. (119 aa)
ACLA_047110Small nuclear ribonucleoprotein SmB, putative. (219 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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