STRINGSTRING
ACLA_058720 ACLA_058720 ACLA_058730 ACLA_058730 ACLA_058910 ACLA_058910 ACLA_000810 ACLA_000810 ACLA_001850 ACLA_001850 ACLA_004700 ACLA_004700 ACLA_071910 ACLA_071910 ACLA_054010 ACLA_054010 ACLA_010010 ACLA_010010 ACLA_010290 ACLA_010290 ACLA_014170 ACLA_014170 ACLA_014650 ACLA_014650 ACLA_060570 ACLA_060570 ACLA_005400 ACLA_005400 ACLA_005560 ACLA_005560 ACLA_064940 ACLA_064940 ACLA_065630 ACLA_065630 ACLA_047860 ACLA_047860 ACLA_048280 ACLA_048280 ACLA_050750 ACLA_050750 ACLA_051000 ACLA_051000 ACLA_051120 ACLA_051120 ACLA_035980 ACLA_035980 ACLA_039310 ACLA_039310 ACLA_042010 ACLA_042010 ACLA_095410 ACLA_095410 ACLA_020720 ACLA_020720 ACLA_021310 ACLA_021310 ACLA_021550 ACLA_021550 ACLA_029480 ACLA_029480 ACLA_080350 ACLA_080350 ACLA_080400 ACLA_080400
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACLA_058720Uncharacterized protein. (508 aa)
ACLA_058730RNA polymerase II subunit 7. (169 aa)
ACLA_058910Transcription initiation factor iif, beta subunit. (374 aa)
ACLA_000810General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
ACLA_001850TFIIH complex helicase Ssl2, putative. (823 aa)
ACLA_004700Uncharacterized protein. (391 aa)
ACLA_071910RNA polymerase II subunit 3. (333 aa)
ACLA_054010RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
ACLA_010010Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
ACLA_010290Cyclin Ccl1, putative; Belongs to the cyclin family. (440 aa)
ACLA_014170DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
ACLA_014650Transcription factor TFIIH subunit Tfb4, putative. (386 aa)
ACLA_060570Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (717 aa)
ACLA_005400Serine/threonine protein kinase (Kin28), putative; Belongs to the protein kinase superfamily. (404 aa)
ACLA_005560DNA-directed RNA polymerase II subunit RPB11a, putative. (165 aa)
ACLA_064940DNA-directed RNA polymerases N/8 kDa subunit superfamily. (74 aa)
ACLA_065630DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1257 aa)
ACLA_047860Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1045 aa)
ACLA_048280CDK-activating kinase assembly factor MAT1. (382 aa)
ACLA_050750RNA polymerase II transcription factor, putative. (644 aa)
ACLA_051000Metallothionein-I gene transcription activator. (76 aa)
ACLA_051120TPR domain protein. (400 aa)
ACLA_035980Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
ACLA_039310RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (826 aa)
ACLA_042010DNA repair protein Rex1, putative. (72 aa)
ACLA_095410Cap binding protein. (848 aa)
ACLA_020720DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1765 aa)
ACLA_021310RNA polymerase subunit. (234 aa)
ACLA_021550TFIIH complex helicase Rad3, putative. (771 aa)
ACLA_029480DNA-directed RNA polymerase I, II, and III subunit Rpb6. (161 aa)
ACLA_080350DNA directed RNA polymerase II 15 kDa subunit, putative. (122 aa)
ACLA_080400Nuclear cap-binding protein subunit 2. (138 aa)
Your Current Organism:
Aspergillus clavatus
NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1
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