44 items (Aspergillus clavatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	ACLA_058300	COP9 signalosome subunit 1 (CsnA), putative. (492 aa)
	ACLA_057810	COP9 signalosome subunit 8 (CsnH), putative. (216 aa)
	ACLA_058720	Uncharacterized protein. (508 aa)
	ACLA_058730	RNA polymerase II subunit 7. (169 aa)
	ACLA_058920	COP9 signalosome subunit 4 (CsnD), putative. (426 aa)
	ACLA_000810	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	ACLA_001850	TFIIH complex helicase Ssl2, putative. (823 aa)
	ACLA_003840	CIA30 domain-containing protein. (231 aa)
	ACLA_004700	Uncharacterized protein. (391 aa)
	ACLA_071800	Peptidyl prolyl cis-trans isomerase Cyclophilin, putative. (152 aa)
	ACLA_071910	RNA polymerase II subunit 3. (333 aa)
	ACLA_075210	COP9 signalosome subunit CsnE. (334 aa)
	ACLA_054010	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	ACLA_054600	DNA repair protein Rhp26/Rad26, putative. (1221 aa)
	ACLA_009060	Ubiquitin ligase subunit HrtA, putative. (120 aa)
	ACLA_010290	Cyclin Ccl1, putative; Belongs to the cyclin family. (440 aa)
	ACLA_010510	COP9 signalosome subunit 6 (CsnF), putative. (396 aa)
	ACLA_011830	Pre-mRNA splicing factor, putative. (242 aa)
	ACLA_014170	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	ACLA_014650	Transcription factor TFIIH subunit Tfb4, putative. (386 aa)
	ACLA_015720	Ubiquitin ligase subunit CulD, putative; Belongs to the cullin family. (914 aa)
	ACLA_005400	Serine/threonine protein kinase (Kin28), putative; Belongs to the protein kinase superfamily. (404 aa)
	ACLA_005560	DNA-directed RNA polymerase II subunit RPB11a, putative. (165 aa)
	ACLA_090770	DNA excision repair protein (Rad26L), putative. (1011 aa)
	ACLA_064940	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (74 aa)
	ACLA_065630	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1257 aa)
	ACLA_045490	BZIP domain-containing protein. (291 aa)
	ACLA_048280	CDK-activating kinase assembly factor MAT1. (382 aa)
	ACLA_048900	WD repeat protein. (479 aa)
	ACLA_050750	RNA polymerase II transcription factor, putative. (644 aa)
	ACLA_051000	Metallothionein-I gene transcription activator. (76 aa)
	ACLA_051620	COP9 signalosome subunit 7 (CsnG), putative. (326 aa)
	ACLA_034660	COP9 signalosome subunit 2 (CsnB), putative. (504 aa)
	ACLA_035980	Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
	ACLA_039150	Ubiquitin. (173 aa)
	ACLA_042010	DNA repair protein Rex1, putative. (72 aa)
	ACLA_020720	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1765 aa)
	ACLA_021310	RNA polymerase subunit. (234 aa)
	ACLA_021550	TFIIH complex helicase Rad3, putative. (771 aa)
	ACLA_029480	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (161 aa)
	ACLA_079380	Uncharacterized protein. (499 aa)
	ACLA_080350	DNA directed RNA polymerase II 15 kDa subunit, putative. (122 aa)
	ACLA_084670	UV-damaged DNA binding protein, putative. (1140 aa)
	ACLA_086620	Uncharacterized protein. (1127 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_000810	ACLA_001850	A1C4Q2	A1C506	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	TFIIH complex helicase Ssl2, putative.	0.999
ACLA_000810	ACLA_003840	A1C4Q2	A1C5K3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	CIA30 domain-containing protein.	0.587
ACLA_000810	ACLA_004700	A1C4Q2	A1C5T8	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.955
ACLA_000810	ACLA_005400	A1C4Q2	A1CD59	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Serine/threonine protein kinase (Kin28), putative; Belongs to the protein kinase superfamily.	0.993
ACLA_000810	ACLA_005560	A1C4Q2	A1CD73	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase II subunit RPB11a, putative.	0.980
ACLA_000810	ACLA_010290	A1C4Q2	A1CA35	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Cyclin Ccl1, putative; Belongs to the cyclin family.	0.991
ACLA_000810	ACLA_010510	A1C4Q2	A1CA57	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	COP9 signalosome subunit 6 (CsnF), putative.	0.705
ACLA_000810	ACLA_014170	A1C4Q2	A1CB62	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.978
ACLA_000810	ACLA_014650	A1C4Q2	A1CBB0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription factor TFIIH subunit Tfb4, putative.	0.999
ACLA_000810	ACLA_020720	A1C4Q2	A1CNZ4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
ACLA_000810	ACLA_021310	A1C4Q2	A1CP51	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	RNA polymerase subunit.	0.978
ACLA_000810	ACLA_021550	A1C4Q2	A1CP70	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	TFIIH complex helicase Rad3, putative.	0.999
ACLA_000810	ACLA_029480	A1C4Q2	A1CRE9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.978
ACLA_000810	ACLA_034660	A1C4Q2	A1CJD9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	COP9 signalosome subunit 2 (CsnB), putative.	0.793
ACLA_000810	ACLA_035980	A1C4Q2	A1CJS1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.982
ACLA_000810	ACLA_039150	A1C4Q2	A1CKM6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Ubiquitin.	0.587
ACLA_000810	ACLA_042010	A1C4Q2	A1CLF5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA repair protein Rex1, putative.	0.994
ACLA_000810	ACLA_045490	A1C4Q2	A1CGS9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	BZIP domain-containing protein.	0.587
ACLA_000810	ACLA_048280	A1C4Q2	A1CHK3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	CDK-activating kinase assembly factor MAT1.	0.999
ACLA_000810	ACLA_048900	A1C4Q2	A1CHR3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	WD repeat protein.	0.811