16 items (Aspergillus clavatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACLA_073920	DNA-directed RNA polymerase I and III subunit Rpc40, putative. (374 aa)
	ACLA_070720	SAP30_Sin3_bdg domain-containing protein. (236 aa)
	ACLA_009590	Uncharacterized protein. (507 aa)
	ACLA_014170	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	ACLA_089220	DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (147 aa)
	ACLA_092470	MYB DNA-binding domain protein. (980 aa)
	ACLA_064940	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (74 aa)
	ACLA_065440	RNA polymerase I subunit Rpa43, putative. (440 aa)
	ACLA_051000	Metallothionein-I gene transcription activator. (76 aa)
	ACLA_052420	Chromatin remodeling complex subunit (Chd3), putative. (1522 aa)
	ACLA_021310	RNA polymerase subunit. (234 aa)
	ACLA_021560	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1734 aa)
	ACLA_029480	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (161 aa)
	ACLA_031820	RNA polymerase I specific transcription initiation factor RRN3 superfamily. (712 aa)
	ACLA_082370	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
	ACLA_085680	SprT family metallopeptidase, putative. (707 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_009590	ACLA_014170	A1C9W8	A1CB62	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.997
ACLA_009590	ACLA_021310	A1C9W8	A1CP51	Uncharacterized protein.	RNA polymerase subunit.	0.999
ACLA_009590	ACLA_021560	A1C9W8	A1CP71	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ACLA_009590	ACLA_029480	A1C9W8	A1CRE9	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.999
ACLA_009590	ACLA_031820	A1C9W8	A1CS26	Uncharacterized protein.	RNA polymerase I specific transcription initiation factor RRN3 superfamily.	0.996
ACLA_009590	ACLA_051000	A1C9W8	A1CIC3	Uncharacterized protein.	Metallothionein-I gene transcription activator.	0.997
ACLA_009590	ACLA_064940	A1C9W8	A1CFY2	Uncharacterized protein.	DNA-directed RNA polymerases N/8 kDa subunit superfamily.	0.997
ACLA_009590	ACLA_065440	A1C9W8	A1CG30	Uncharacterized protein.	RNA polymerase I subunit Rpa43, putative.	0.999
ACLA_009590	ACLA_070720	A1C9W8	A1C6L8	Uncharacterized protein.	SAP30_Sin3_bdg domain-containing protein.	0.974
ACLA_009590	ACLA_073920	A1C9W8	A1C7I5	Uncharacterized protein.	DNA-directed RNA polymerase I and III subunit Rpc40, putative.	0.999
ACLA_009590	ACLA_082370	A1C9W8	A1CTA9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ACLA_009590	ACLA_085680	A1C9W8	A1CU84	Uncharacterized protein.	SprT family metallopeptidase, putative.	0.501
ACLA_009590	ACLA_089220	A1C9W8	A1CED1	Uncharacterized protein.	DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
ACLA_009590	ACLA_092470	A1C9W8	A1CFA0	Uncharacterized protein.	MYB DNA-binding domain protein.	0.663
ACLA_014170	ACLA_009590	A1CB62	A1C9W8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.997
ACLA_014170	ACLA_021310	A1CB62	A1CP51	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RNA polymerase subunit.	0.999
ACLA_014170	ACLA_021560	A1CB62	A1CP71	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ACLA_014170	ACLA_029480	A1CB62	A1CRE9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.999
ACLA_014170	ACLA_031820	A1CB62	A1CS26	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RNA polymerase I specific transcription initiation factor RRN3 superfamily.	0.979
ACLA_014170	ACLA_051000	A1CB62	A1CIC3	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Metallothionein-I gene transcription activator.	0.999