44 items (Aspergillus clavatus) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	ACLA_051000	Metallothionein-I gene transcription activator. (76 aa)
	ACLA_034050	Transcription initiation factor TFIID subunit 12, putative. (630 aa)
	ACLA_035980	Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
	ACLA_037980	RNA polymerase I and III transcription factor complex component Tbp, putative. (273 aa)
	ACLA_038510	Transcription initiation protein. (350 aa)
	ACLA_042010	DNA repair protein Rex1, putative. (72 aa)
	ACLA_020630	Transcription factor TFIIA complex subunit Toa1, putative. (402 aa)
	ACLA_020720	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1765 aa)
	ACLA_020830	Transcription initiation factor TFIID, 31kD subunit, putative. (313 aa)
	ACLA_021310	RNA polymerase subunit. (234 aa)
	ACLA_021550	TFIIH complex helicase Rad3, putative. (771 aa)
	ACLA_023760	DUF4211 domain-containing protein. (463 aa)
	ACLA_026140	Transcription initiation factor TFIID subunit 13, putative. (170 aa)
	ACLA_029480	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (161 aa)
	ACLA_031570	Transcription initiation factor TFIID subunit, putative. (744 aa)
	ACLA_080290	Transcription factor TFIIE complex alpha subunit, putative. (452 aa)
	ACLA_080350	DNA directed RNA polymerase II 15 kDa subunit, putative. (122 aa)
	ACLA_083810	Transcription factor TFIID complex 145 kDa subunit, putative. (1113 aa)
	ACLA_086380	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (294 aa)
	ACLA_058350	Uncharacterized protein. (1269 aa)
	ACLA_058720	Uncharacterized protein. (508 aa)
	ACLA_058730	RNA polymerase II subunit 7. (169 aa)
	ACLA_058910	Transcription initiation factor iif, beta subunit. (374 aa)
	ACLA_000810	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	ACLA_001500	Transcription initiation factor TFIID complex 60 kDa subunit. (448 aa)
	ACLA_001520	Transcription initiation factor TFIID subunit beta, putative. (521 aa)
	ACLA_001850	TFIIH complex helicase Ssl2, putative. (823 aa)
	ACLA_004700	Uncharacterized protein. (391 aa)
	ACLA_071910	RNA polymerase II subunit 3. (333 aa)
	ACLA_072610	Transcription initiation factor TFIID subunit 7, putative. (484 aa)
	ACLA_074620	Uncharacterized protein. (360 aa)
	ACLA_074630	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	ACLA_054010	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	ACLA_010290	Cyclin Ccl1, putative; Belongs to the cyclin family. (440 aa)
	ACLA_014170	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	ACLA_014550	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (286 aa)
	ACLA_014650	Transcription factor TFIIH subunit Tfb4, putative. (386 aa)
	ACLA_060570	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (717 aa)
	ACLA_005400	Serine/threonine protein kinase (Kin28), putative; Belongs to the protein kinase superfamily. (404 aa)
	ACLA_005560	DNA-directed RNA polymerase II subunit RPB11a, putative. (165 aa)
	ACLA_064940	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (74 aa)
	ACLA_065630	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1257 aa)
	ACLA_048280	CDK-activating kinase assembly factor MAT1. (382 aa)
	ACLA_050750	RNA polymerase II transcription factor, putative. (644 aa)

Your Current Organism:

Aspergillus clavatus

NCBI taxonomy Id: 344612
Other names: A. clavatus NRRL 1, Aspergillus clavatus NRRL 1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACLA_000810	ACLA_001500	A1C4Q2	A1C4X1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID complex 60 kDa subunit.	0.923
ACLA_000810	ACLA_001520	A1C4Q2	A1C4X3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID subunit beta, putative.	0.894
ACLA_000810	ACLA_001850	A1C4Q2	A1C506	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	TFIIH complex helicase Ssl2, putative.	0.999
ACLA_000810	ACLA_004700	A1C4Q2	A1C5T8	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.955
ACLA_000810	ACLA_005400	A1C4Q2	A1CD59	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Serine/threonine protein kinase (Kin28), putative; Belongs to the protein kinase superfamily.	0.993
ACLA_000810	ACLA_005560	A1C4Q2	A1CD73	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase II subunit RPB11a, putative.	0.980
ACLA_000810	ACLA_010290	A1C4Q2	A1CA35	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Cyclin Ccl1, putative; Belongs to the cyclin family.	0.991
ACLA_000810	ACLA_014170	A1C4Q2	A1CB62	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.978
ACLA_000810	ACLA_014550	A1C4Q2	A1CBA0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.871
ACLA_000810	ACLA_014650	A1C4Q2	A1CBB0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription factor TFIIH subunit Tfb4, putative.	0.999
ACLA_000810	ACLA_020630	A1C4Q2	A1CNY5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription factor TFIIA complex subunit Toa1, putative.	0.985
ACLA_000810	ACLA_020720	A1C4Q2	A1CNZ4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
ACLA_000810	ACLA_020830	A1C4Q2	A1CP04	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID, 31kD subunit, putative.	0.874
ACLA_000810	ACLA_021310	A1C4Q2	A1CP51	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	RNA polymerase subunit.	0.978
ACLA_000810	ACLA_021550	A1C4Q2	A1CP70	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	TFIIH complex helicase Rad3, putative.	0.999
ACLA_000810	ACLA_023760	A1C4Q2	A1CPU1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DUF4211 domain-containing protein.	0.758
ACLA_000810	ACLA_026140	A1C4Q2	A1CQH6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID subunit 13, putative.	0.897
ACLA_000810	ACLA_029480	A1C4Q2	A1CRE9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.978
ACLA_000810	ACLA_031570	A1C4Q2	A1CS03	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID subunit, putative.	0.874
ACLA_000810	ACLA_034050	A1C4Q2	A1CJ78	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Transcription initiation factor TFIID subunit 12, putative.	0.925