6 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L4L3	annotation not available (1066 aa)
	A0A090LN64	Cyclic nucleotide-gated olfactory channel. (669 aa)
	A0A090LPE2	Hexosaminidase D. (438 aa)
	A0A090MXF4	Cyclic nucleotide-gated olfactory channel. (710 aa)
	A0A090MXK0	annotation not available (583 aa)
	A0A090MYS2	annotation not available (802 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L4L3	A0A090LN64	annotation not available	Cyclic nucleotide-gated olfactory channel.	0.943
A0A090L4L3	A0A090LPE2	annotation not available	Hexosaminidase D.	0.569
A0A090L4L3	A0A090MXF4	annotation not available	Cyclic nucleotide-gated olfactory channel.	0.944
A0A090L4L3	A0A090MYS2	annotation not available	annotation not available	0.992
A0A090LN64	A0A090L4L3	Cyclic nucleotide-gated olfactory channel.	annotation not available	0.943
A0A090LN64	A0A090LPE2	Cyclic nucleotide-gated olfactory channel.	Hexosaminidase D.	0.446
A0A090LPE2	A0A090L4L3	Hexosaminidase D.	annotation not available	0.569
A0A090LPE2	A0A090LN64	Hexosaminidase D.	Cyclic nucleotide-gated olfactory channel.	0.446
A0A090LPE2	A0A090MXF4	Hexosaminidase D.	Cyclic nucleotide-gated olfactory channel.	0.446
A0A090LPE2	A0A090MXK0	Hexosaminidase D.	annotation not available	0.556
A0A090LPE2	A0A090MYS2	Hexosaminidase D.	annotation not available	0.446
A0A090MXF4	A0A090L4L3	Cyclic nucleotide-gated olfactory channel.	annotation not available	0.944
A0A090MXF4	A0A090LPE2	Cyclic nucleotide-gated olfactory channel.	Hexosaminidase D.	0.446
A0A090MXK0	A0A090LPE2	annotation not available	Hexosaminidase D.	0.556
A0A090MYS2	A0A090L4L3	annotation not available	annotation not available	0.992
A0A090MYS2	A0A090LPE2	annotation not available	Hexosaminidase D.	0.446