7 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L4Q8	Uncharacterized protein. (258 aa)
	A0A090L6M6	Uncharacterized protein. (215 aa)
	A0A090LFF6	RNA-binding protein 39. (498 aa)
	A0A090LHV6	BcDNA.GH04978. (682 aa)
	A0A090LKJ2	Uncharacterized protein. (627 aa)
	A0A090MZA2	Luc7-like protein 3. (316 aa)
	A0A090N101	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (2872 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L4Q8	A0A090L6M6	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A090L4Q8	A0A090LKJ2	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A090L4Q8	A0A090MZA2	Uncharacterized protein.	Luc7-like protein 3.	0.485
A0A090L4Q8	A0A090N101	Uncharacterized protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.750
A0A090L6M6	A0A090L4Q8	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A090L6M6	A0A090LFF6	Uncharacterized protein.	RNA-binding protein 39.	0.506
A0A090L6M6	A0A090LKJ2	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A090L6M6	A0A090N101	Uncharacterized protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.806
A0A090LFF6	A0A090L6M6	RNA-binding protein 39.	Uncharacterized protein.	0.506
A0A090LFF6	A0A090LHV6	RNA-binding protein 39.	BcDNA.GH04978.	0.736
A0A090LFF6	A0A090LKJ2	RNA-binding protein 39.	Uncharacterized protein.	0.869
A0A090LFF6	A0A090MZA2	RNA-binding protein 39.	Luc7-like protein 3.	0.820
A0A090LFF6	A0A090N101	RNA-binding protein 39.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.542
A0A090LHV6	A0A090LFF6	BcDNA.GH04978.	RNA-binding protein 39.	0.736
A0A090LHV6	A0A090LKJ2	BcDNA.GH04978.	Uncharacterized protein.	0.721
A0A090LHV6	A0A090MZA2	BcDNA.GH04978.	Luc7-like protein 3.	0.680
A0A090LHV6	A0A090N101	BcDNA.GH04978.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.489
A0A090LKJ2	A0A090L4Q8	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A090LKJ2	A0A090L6M6	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A090LKJ2	A0A090LFF6	Uncharacterized protein.	RNA-binding protein 39.	0.869