24 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LE98	Protein MAK16 homolog; Belongs to the MAK16 family. (261 aa)
	A0A090KWP4	Uncharacterized protein. (153 aa)
	A0A090L191	annotation not available (566 aa)
	A0A090L1I1	Ribosome production factor 1. (287 aa)
	A0A090L2K5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (806 aa)
	A0A090L626	60S ribosomal protein L7. (243 aa)
	A0A090L6Y7	Ribosome biogenesis protein NSA2 homolog. (199 aa)
	A0A090L872	H/ACA ribonucleoprotein complex subunit 2. (161 aa)
	A0A090L9W1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	A0A090LBZ4	MKI67 FHA domain-interacting nucleolar phosphoprotein. (221 aa)
	A0A090LD74	39S ribosomal protein L1, mitochondrial. (365 aa)
	A0A090LGW1	Ribosome biogenesis protein WDR12. (412 aa)
	A0A090LIK7	Uncharacterized protein. (241 aa)
	A0A090LJB1	RNA helicase. (567 aa)
	A0A090LJR6	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (514 aa)
	A0A090LJT5	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (689 aa)
	A0A090LLB7	Zinc finger, HIT-type domain-containing protein. (506 aa)
	A0A090MU43	Polynucleotide 5'-hydroxyl-kinase NOL9. (595 aa)
	A0A090MW22	Uncharacterized protein. (159 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (232 aa)
	A0A090MXP2	Ribosome production factor 2 homolog. (296 aa)
	A0A090MXX6	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	A0A090MYR4	Putative ribosomal RNA methyltransferase NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (873 aa)
	A0A090MZ76	Nucleolar pre-ribosomal-associated protein 1. (458 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090KWP4	A0A090L2K5	A0A090KWP4	A0A090L2K5	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.459
A0A090KWP4	A0A090L626	A0A090KWP4	A0A090L626	Uncharacterized protein.	60S ribosomal protein L7.	0.710
A0A090KWP4	A0A090L872	A0A090KWP4	A0A090L872	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit 2.	0.747
A0A090KWP4	A0A090L9W1	A0A090KWP4	A0A090L9W1	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.719
A0A090KWP4	A0A090LD74	A0A090KWP4	A0A090LD74	Uncharacterized protein.	39S ribosomal protein L1, mitochondrial.	0.559
A0A090KWP4	A0A090LJB1	A0A090KWP4	A0A090LJB1	Uncharacterized protein.	RNA helicase.	0.739
A0A090KWP4	A0A090LJT5	A0A090KWP4	A0A090LJT5	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.409
A0A090KWP4	A0A090MXX6	A0A090KWP4	A0A090MXX6	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.641
A0A090L191	A0A090L1I1	A0A090L191	A0A090L1I1	annotation not available	Ribosome production factor 1.	0.958
A0A090L191	A0A090L2K5	A0A090L191	A0A090L2K5	annotation not available	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.993
A0A090L191	A0A090L626	A0A090L191	A0A090L626	annotation not available	60S ribosomal protein L7.	0.973
A0A090L191	A0A090L6Y7	A0A090L191	A0A090L6Y7	annotation not available	Ribosome biogenesis protein NSA2 homolog.	0.971
A0A090L191	A0A090L872	A0A090L191	A0A090L872	annotation not available	H/ACA ribonucleoprotein complex subunit 2.	0.924
A0A090L191	A0A090L9W1	A0A090L191	A0A090L9W1	annotation not available	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.913
A0A090L191	A0A090LBZ4	A0A090L191	A0A090LBZ4	annotation not available	MKI67 FHA domain-interacting nucleolar phosphoprotein.	0.999
A0A090L191	A0A090LD74	A0A090L191	A0A090LD74	annotation not available	39S ribosomal protein L1, mitochondrial.	0.481
A0A090L191	A0A090LE98	A0A090L191	A0A090LE98	annotation not available	Protein MAK16 homolog; Belongs to the MAK16 family.	0.987
A0A090L191	A0A090LGW1	A0A090L191	A0A090LGW1	annotation not available	Ribosome biogenesis protein WDR12.	0.997
A0A090L191	A0A090LIK7	A0A090L191	A0A090LIK7	annotation not available	Uncharacterized protein.	0.788
A0A090L191	A0A090LJB1	A0A090L191	A0A090LJB1	annotation not available	RNA helicase.	0.999