65 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LK28	Exosome complex component RRP46. (223 aa)
	A0A090LKE7	Uncharacterized protein. (135 aa)
	A0A090LKN6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (218 aa)
	A0A090LL84	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein. (889 aa)
	A0A090LN11	Tristetraprolin. (325 aa)
	A0A090LNP8	M7GpppN-mRNA hydrolase. (514 aa)
	A0A090LNQ0	Uncharacterized protein. (653 aa)
	A0A090LSJ2	Uncharacterized protein. (204 aa)
	A0A090MX67	Uncharacterized protein. (307 aa)
	A0A090MXK8	DNA-directed RNA polymerase II subunit RPB7. (174 aa)
	A0A090MXL9	Btz domain-containing protein. (426 aa)
	A0A090MXZ6	Pop2. (304 aa)
	A0A090MY41	Roquin-1. (767 aa)
	A0A090MY88	Uncharacterized protein. (333 aa)
	A0A090MYC8	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090MYC9	Exosome complex component RRP4. (299 aa)
	A0A090MZ60	Uncharacterized protein. (144 aa)
	A0A090N009	Regulator of nonsense transcripts 1. (836 aa)
	A0A090N084	Uncharacterized protein. (339 aa)
	A0A090N0D7	LD23303p. (1471 aa)
	A0A090N0Z7	Uncharacterized protein. (640 aa)
	A0A090L9C6	Telomerase-binding protein EST1A. (1322 aa)
	A0A090L8K1	LSM14 domain-containing protein. (678 aa)
	A0A090L8J6	Exosome complex component RRP40. (237 aa)
	A0A090L8B5	Poly(A)-specific ribonuclease PARN. (645 aa)
	A0A090L7S4	Serine/threonine-protein kinase Smg1; Belongs to the PI3/PI4-kinase family. (2469 aa)
	A0A090L7L0	DNA-directed RNA polymerase II subunit RPB4. (146 aa)
	A0A090L754	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090L6P1	Uncharacterized protein. (364 aa)
	A0A090L5C8	Protein Smaug. (491 aa)
	A0A090L4G6	Cth1. (475 aa)
	A0A090L3T2	PRP19/PSO4 homolog. (488 aa)
	A0A090L365	Topoisomerase II-associated protein PAT1 family-containing protein. (677 aa)
	A0A090L2I6	annotation not available (249 aa)
	A0A090L155	annotation not available (381 aa)
	A0A090L105	Exosome complex component RRP42. (324 aa)
	A0A090L0P8	Zinc finger, CCCH-type domain-containing protein. (254 aa)
	A0A090L0L6	ATP-dependent RNA helicase WM6. (425 aa)
	A0A090KZW3	Exosome complex component RRP45. (299 aa)
	A0A090KZK0	Uncharacterized protein. (78 aa)
	A0A090KXW2	Cth1. (465 aa)
	A0A090KX83	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein. (848 aa)
	A0A090LAT3	CCR4-NOT transcription complex subunit 2. (359 aa)
	A0A090LC45	M7GpppX diphosphatase. (295 aa)
	A0A090LCD1	Target of rapamycin; Belongs to the PI3/PI4-kinase family. (462 aa)
	A0A090LCP3	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (386 aa)
	A0A090LCS9	CCR4-NOT transcription complex subunit 3. (685 aa)
	A0A090LDG9	annotation not available (637 aa)
	A0A090LDQ0	RE04053p. (1074 aa)
	A0A090LEB1	Regulator of nonsense transcripts 1. (1015 aa)
	A0A090LF42	Decapping and exoribonuclease protein. (360 aa)
	A0A090LFD3	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein. (369 aa)
	A0A090LFF9	Exosome complex component RRP41. (258 aa)
	A0A090LFH3	Tim10/DDP family zinc finger domain-containing protein. (87 aa)
	A0A090LFU1	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle. (944 aa)
	A0A090LFU2	LD24721p. (1779 aa)
	A0A090LFU6	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle. (858 aa)
	A0A090LGR9	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein. (600 aa)
	A0A090LI29	Uncharacterized protein. (1151 aa)
	A0A090LI33	M7GpppN-mRNA hydrolase. (163 aa)
	A0A090LIN3	Exosome component 10. (746 aa)
	A0A090LJ05	PAB-dependent poly(A)-specific ribonuclease subunit PAN3. (598 aa)
	A0A090LJ31	Decapping protein 1. (298 aa)
	A0A090LJM1	Protein mago nashi. (149 aa)
	A0A090LJM6	CCR4-NOT transcription complex subunit 1. (2066 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KX83	A0A090KZW3	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Exosome complex component RRP45.	0.970
A0A090KX83	A0A090L0L6	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	ATP-dependent RNA helicase WM6.	0.758
A0A090KX83	A0A090L105	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Exosome complex component RRP42.	0.967
A0A090KX83	A0A090L2I6	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	annotation not available	0.894
A0A090KX83	A0A090L6P1	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Uncharacterized protein.	0.416
A0A090KX83	A0A090L8J6	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Exosome complex component RRP40.	0.966
A0A090KX83	A0A090LDG9	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	annotation not available	0.623
A0A090KX83	A0A090LDQ0	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	RE04053p.	0.506
A0A090KX83	A0A090LEB1	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Regulator of nonsense transcripts 1.	0.480
A0A090KX83	A0A090LF42	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Decapping and exoribonuclease protein.	0.416
A0A090KX83	A0A090LFD3	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein.	0.623
A0A090KX83	A0A090LFF9	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Exosome complex component RRP41.	0.894
A0A090KX83	A0A090LFH3	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Tim10/DDP family zinc finger domain-containing protein.	0.894
A0A090KX83	A0A090LFU1	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	0.433
A0A090KX83	A0A090LFU2	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	LD24721p.	0.859
A0A090KX83	A0A090LFU6	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Plays a role in maintenance of steady-state concentration and turnover of microRNAs (miRNA) by degradation of mature miRNA. Degradation role is enhanced when in complex with paxt-1. Partially redundant to xrn-1 in miRNA guide strand degradation. Implicated in differential regulation of mRNAs such as let-7 by controlling the accumulation of mature miRNA. Positively regulates molting of the pharyngeal cuticle.	0.433
A0A090KX83	A0A090LK28	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Exosome complex component RRP46.	0.968
A0A090KX83	A0A090LKE7	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Uncharacterized protein.	0.818
A0A090KX83	A0A090LKN6	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.818
A0A090KX83	A0A090LSJ2	3'-5' exonuclease domain and Ribonuclease H-like domain-containing protein.	Uncharacterized protein.	0.416