11 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L4U5	Uncharacterized protein. (183 aa)
	A0A090LAP5	Eukaryotic translation initiation factor 2 subunit 3. (469 aa)
	A0A090LC31	Malignant T-cell-amplified sequence 1. (182 aa)
	A0A090LCI3	Density-regulated protein. (166 aa)
	A0A090LEV7	Eukaryotic translation initiation factor 4H. (224 aa)
	A0A090LFI0	Eukaryotic translation initiation factor 2 subunit 2. (245 aa)
	A0A090LIK2	Eukaryotic translation initiation factor 5. (402 aa)
	A0A090LLH2	Squamous cell carcinoma antigen recognized by T-cells 3. (789 aa)
	A0A090L039	Translation initiation factor SUI1 domain-containing protein. (101 aa)
	A0A090L0C3	Uncharacterized protein. (435 aa)
	A0A090L4P7	Uncharacterized protein. (523 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L039	A0A090LCI3	Translation initiation factor SUI1 domain-containing protein.	Density-regulated protein.	0.414
A0A090L0C3	A0A090LCI3	Uncharacterized protein.	Density-regulated protein.	0.414
A0A090L4P7	A0A090LCI3	Uncharacterized protein.	Density-regulated protein.	0.414
A0A090L4U5	A0A090LCI3	Uncharacterized protein.	Density-regulated protein.	0.414
A0A090LAP5	A0A090LCI3	Eukaryotic translation initiation factor 2 subunit 3.	Density-regulated protein.	0.826
A0A090LAP5	A0A090LEV7	Eukaryotic translation initiation factor 2 subunit 3.	Eukaryotic translation initiation factor 4H.	0.930
A0A090LAP5	A0A090LFI0	Eukaryotic translation initiation factor 2 subunit 3.	Eukaryotic translation initiation factor 2 subunit 2.	0.999
A0A090LAP5	A0A090LIK2	Eukaryotic translation initiation factor 2 subunit 3.	Eukaryotic translation initiation factor 5.	0.998
A0A090LC31	A0A090LCI3	Malignant T-cell-amplified sequence 1.	Density-regulated protein.	0.995
A0A090LCI3	A0A090L039	Density-regulated protein.	Translation initiation factor SUI1 domain-containing protein.	0.414
A0A090LCI3	A0A090L0C3	Density-regulated protein.	Uncharacterized protein.	0.414
A0A090LCI3	A0A090L4P7	Density-regulated protein.	Uncharacterized protein.	0.414
A0A090LCI3	A0A090L4U5	Density-regulated protein.	Uncharacterized protein.	0.414
A0A090LCI3	A0A090LAP5	Density-regulated protein.	Eukaryotic translation initiation factor 2 subunit 3.	0.826
A0A090LCI3	A0A090LC31	Density-regulated protein.	Malignant T-cell-amplified sequence 1.	0.995
A0A090LCI3	A0A090LFI0	Density-regulated protein.	Eukaryotic translation initiation factor 2 subunit 2.	0.923
A0A090LCI3	A0A090LIK2	Density-regulated protein.	Eukaryotic translation initiation factor 5.	0.915
A0A090LEV7	A0A090LAP5	Eukaryotic translation initiation factor 4H.	Eukaryotic translation initiation factor 2 subunit 3.	0.930
A0A090LEV7	A0A090LFI0	Eukaryotic translation initiation factor 4H.	Eukaryotic translation initiation factor 2 subunit 2.	0.814
A0A090LEV7	A0A090LIK2	Eukaryotic translation initiation factor 4H.	Eukaryotic translation initiation factor 5.	0.917