17 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	A0A090LKF4	Nucleolar protein 58. (460 aa)
	A0A090L872	H/ACA ribonucleoprotein complex subunit 2. (161 aa)
	A0A090L6R6	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (149 aa)
	A0A090L1J5	Putative tRNA pseudouridine synthase Pus10. (785 aa)
	A0A090LQ23	FI04781p. (482 aa)
	A0A090MU53	Fibrillarin. (325 aa)
	A0A090MXC2	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (653 aa)
	A0A090MXR9	Ribonuclease P protein subunit p29. (175 aa)
	A0A090MY90	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (81 aa)
	A0A090MY91	Bcl2-like family and Blc2 family-containing protein. (227 aa)
	A0A090L197	U3 small nucleolar RNA-interacting protein 2. (449 aa)
	A0A090L9W1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	A0A090LB16	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (203 aa)
	A0A090LDN7	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (199 aa)
	A0A090LF19	DNA/RNA-binding protein Alba-like family-containing protein. (186 aa)
	A0A090LF89	H/ACA ribonucleoprotein complex subunit 4. (438 aa)
	A0A090LFQ8	Ribonucleases P/MRP protein subunit POP1. (769 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L197	A0A090L1J5	U3 small nucleolar RNA-interacting protein 2.	Putative tRNA pseudouridine synthase Pus10.	0.977
A0A090L197	A0A090L872	U3 small nucleolar RNA-interacting protein 2.	H/ACA ribonucleoprotein complex subunit 2.	0.945
A0A090L197	A0A090L9W1	U3 small nucleolar RNA-interacting protein 2.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.998
A0A090L197	A0A090LF89	U3 small nucleolar RNA-interacting protein 2.	H/ACA ribonucleoprotein complex subunit 4.	0.521
A0A090L197	A0A090LKF4	U3 small nucleolar RNA-interacting protein 2.	Nucleolar protein 58.	0.999
A0A090L197	A0A090LQ23	U3 small nucleolar RNA-interacting protein 2.	FI04781p.	0.999
A0A090L197	A0A090MU53	U3 small nucleolar RNA-interacting protein 2.	Fibrillarin.	0.977
A0A090L197	A0A090MXC2	U3 small nucleolar RNA-interacting protein 2.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.996
A0A090L1J5	A0A090L197	Putative tRNA pseudouridine synthase Pus10.	U3 small nucleolar RNA-interacting protein 2.	0.977
A0A090L1J5	A0A090L872	Putative tRNA pseudouridine synthase Pus10.	H/ACA ribonucleoprotein complex subunit 2.	0.988
A0A090L1J5	A0A090L9W1	Putative tRNA pseudouridine synthase Pus10.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.982
A0A090L1J5	A0A090LB16	Putative tRNA pseudouridine synthase Pus10.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.957
A0A090L1J5	A0A090LDN7	Putative tRNA pseudouridine synthase Pus10.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.488
A0A090L1J5	A0A090LF89	Putative tRNA pseudouridine synthase Pus10.	H/ACA ribonucleoprotein complex subunit 4.	0.984
A0A090L1J5	A0A090LKF4	Putative tRNA pseudouridine synthase Pus10.	Nucleolar protein 58.	0.994
A0A090L1J5	A0A090LQ23	Putative tRNA pseudouridine synthase Pus10.	FI04781p.	0.996
A0A090L1J5	A0A090MXC2	Putative tRNA pseudouridine synthase Pus10.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.928
A0A090L6R6	A0A090L872	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	H/ACA ribonucleoprotein complex subunit 2.	0.874
A0A090L6R6	A0A090L9W1	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.920
A0A090L6R6	A0A090LF19	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	DNA/RNA-binding protein Alba-like family-containing protein.	0.939