33 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L938	Uncharacterized protein family UPF0183-containing protein. (134 aa)
	A0A090L731	Prohormone convertase 1; Belongs to the peptidase S8 family. (650 aa)
	A0A090L6W4	Arfaptin homology (AH) domain and Arfaptin homology (AH) domain/BAR domain-containing protein. (329 aa)
	A0A090L5T6	Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family. (372 aa)
	A0A090L3J6	annotation not available (191 aa)
	A0A090L3G3	GRIP domain-containing protein. (506 aa)
	A0A090L2V7	Uncharacterized protein. (93 aa)
	A0A090L2J6	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (932 aa)
	A0A090MZR3	FI09421p. (243 aa)
	A0A090MYW1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1136 aa)
	A0A090MYU9	Secretory carrier-associated membrane protein. (324 aa)
	A0A090MYU2	Protein SYS1 homolog. (154 aa)
	A0A090MYM5	Copper-transporting ATPase 2. (1039 aa)
	A0A090MXZ3	UPF0183 protein C16orf70. (299 aa)
	A0A090MXU4	Golgi phosphoprotein 3. (286 aa)
	A0A090MWD7	Ras-related protein Rab-30. (208 aa)
	A0A090L162	Ras-related protein Rab-14. (178 aa)
	A0A090KW83	TRAPP II complex, Trs120 family-containing protein. (1196 aa)
	A0A090MV78	Uncharacterized protein. (360 aa)
	A0A090LTH1	Pi4KIIalpha. (206 aa)
	A0A090LTC4	annotation not available (577 aa)
	A0A090LQV5	Golgi phosphoprotein 3. (294 aa)
	A0A090LNS8	Pi4KIIalpha. (464 aa)
	A0A090LJP4	Pleckstrin homology domain and Pleckstrin homology-like domain-containing protein. (146 aa)
	A0A090LHR4	Uncharacterized protein. (382 aa)
	A0A090LG56	Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family. (721 aa)
	A0A090LG52	PQ-loop repeat-containing protein. (170 aa)
	A0A090LER0	Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family. (256 aa)
	A0A090LDJ4	Prohormone convertase 1; Belongs to the peptidase S8 family. (481 aa)
	A0A090LC86	Protein FAM91A1. (820 aa)
	A0A090LB68	annotation not available (5165 aa)
	A0A090L9S6	Uncharacterized protein. (144 aa)
	A0A090L965	Protein dopey-1. (2659 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KW83	A0A090L162	TRAPP II complex, Trs120 family-containing protein.	Ras-related protein Rab-14.	0.437
A0A090KW83	A0A090L3J6	TRAPP II complex, Trs120 family-containing protein.	annotation not available	0.994
A0A090L162	A0A090KW83	Ras-related protein Rab-14.	TRAPP II complex, Trs120 family-containing protein.	0.437
A0A090L162	A0A090L3G3	Ras-related protein Rab-14.	GRIP domain-containing protein.	0.521
A0A090L162	A0A090L3J6	Ras-related protein Rab-14.	annotation not available	0.417
A0A090L162	A0A090L5T6	Ras-related protein Rab-14.	Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family.	0.434
A0A090L162	A0A090L6W4	Ras-related protein Rab-14.	Arfaptin homology (AH) domain and Arfaptin homology (AH) domain/BAR domain-containing protein.	0.626
A0A090L162	A0A090LB68	Ras-related protein Rab-14.	annotation not available	0.464
A0A090L162	A0A090LC86	Ras-related protein Rab-14.	Protein FAM91A1.	0.446
A0A090L162	A0A090LER0	Ras-related protein Rab-14.	Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family.	0.434
A0A090L162	A0A090LHR4	Ras-related protein Rab-14.	Uncharacterized protein.	0.417
A0A090L162	A0A090MWD7	Ras-related protein Rab-14.	Ras-related protein Rab-30.	0.539
A0A090L162	A0A090MZR3	Ras-related protein Rab-14.	FI09421p.	0.812
A0A090L2J6	A0A090L965	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Protein dopey-1.	0.491
A0A090L2J6	A0A090L9S6	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.543
A0A090L2J6	A0A090LG52	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	PQ-loop repeat-containing protein.	0.543
A0A090L2J6	A0A090MYW1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.822
A0A090L2V7	A0A090L965	Uncharacterized protein.	Protein dopey-1.	0.491
A0A090L2V7	A0A090L9S6	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A090L2V7	A0A090LG52	Uncharacterized protein.	PQ-loop repeat-containing protein.	0.543