21 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LBI1	Uncharacterized protein. (472 aa)
	A0A090L0T6	UNC93-like protein MFSD11. (453 aa)
	A0A090L788	Uncharacterized protein. (134 aa)
	A0A090L859	E3 ubiquitin-protein ligase UBR5. (2707 aa)
	A0A090MWH8	Fanconi anemia group J protein. (757 aa)
	A0A090MVU8	UNC93-like protein MFSD11. (438 aa)
	A0A090MU36	E3 ubiquitin-protein ligase TRIP12. (1951 aa)
	A0A090KYQ8	Zinc finger, MIZ-type domain-containing protein. (399 aa)
	A0A090LBW5	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4. (292 aa)
	A0A090LFT2	Enhancer of polycomb-like protein. (516 aa)
	A0A090LE48	MIF4-like, type 1/2/3 domain and Armadillo-type fold domain-containing protein. (280 aa)
	A0A090LV35	Wings apart-like protein homolog. (571 aa)
	A0A090LP80	Brahma associated protein 170kD. (1057 aa)
	A0A090LC64	N-glycosylase/DNA lyase. (305 aa)
	A0A090L9L0	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (543 aa)
	A0A090L4I3	Zinc finger, MIZ-type domain-containing protein. (368 aa)
	A0A090LI74	UNC93-like protein MFSD11. (459 aa)
	A0A090LJ42	Uncharacterized protein. (338 aa)
	A0A090L3I2	annotation not available (408 aa)
	A0A090L8E2	SAP domain and Zinc finger, MIZ-type domain-containing protein. (640 aa)
	A0A090L1F7	Zinc finger, MIZ-type domain-containing protein. (854 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KYQ8	A0A090LBI1	Zinc finger, MIZ-type domain-containing protein.	Uncharacterized protein.	0.517
A0A090KYQ8	A0A090MWH8	Zinc finger, MIZ-type domain-containing protein.	Fanconi anemia group J protein.	0.433
A0A090L1F7	A0A090LBI1	Zinc finger, MIZ-type domain-containing protein.	Uncharacterized protein.	0.517
A0A090L1F7	A0A090MWH8	Zinc finger, MIZ-type domain-containing protein.	Fanconi anemia group J protein.	0.433
A0A090L3I2	A0A090LBI1	annotation not available	Uncharacterized protein.	0.664
A0A090L3I2	A0A090MU36	annotation not available	E3 ubiquitin-protein ligase TRIP12.	0.533
A0A090L4I3	A0A090LBI1	Zinc finger, MIZ-type domain-containing protein.	Uncharacterized protein.	0.517
A0A090L4I3	A0A090MWH8	Zinc finger, MIZ-type domain-containing protein.	Fanconi anemia group J protein.	0.433
A0A090L788	A0A090L859	Uncharacterized protein.	E3 ubiquitin-protein ligase UBR5.	0.424
A0A090L788	A0A090LBI1	Uncharacterized protein.	Uncharacterized protein.	0.634
A0A090L788	A0A090LJ42	Uncharacterized protein.	Uncharacterized protein.	0.620
A0A090L788	A0A090MU36	Uncharacterized protein.	E3 ubiquitin-protein ligase TRIP12.	0.525
A0A090L859	A0A090L788	E3 ubiquitin-protein ligase UBR5.	Uncharacterized protein.	0.424
A0A090L859	A0A090LBI1	E3 ubiquitin-protein ligase UBR5.	Uncharacterized protein.	0.430
A0A090L859	A0A090MU36	E3 ubiquitin-protein ligase UBR5.	E3 ubiquitin-protein ligase TRIP12.	0.999
A0A090L8E2	A0A090LBI1	SAP domain and Zinc finger, MIZ-type domain-containing protein.	Uncharacterized protein.	0.517
A0A090L8E2	A0A090MWH8	SAP domain and Zinc finger, MIZ-type domain-containing protein.	Fanconi anemia group J protein.	0.433
A0A090L9L0	A0A090MU36	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	E3 ubiquitin-protein ligase TRIP12.	0.467
A0A090LBI1	A0A090KYQ8	Uncharacterized protein.	Zinc finger, MIZ-type domain-containing protein.	0.517
A0A090LBI1	A0A090L1F7	Uncharacterized protein.	Zinc finger, MIZ-type domain-containing protein.	0.517