18 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090KZM7	La-related protein 1. (445 aa)
	A0A090KX75	AN1-type zinc finger protein 1. (247 aa)
	A0A090KX09	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family. (694 aa)
	A0A090MXW9	La-related protein CG11505. (861 aa)
	A0A090MXL9	Btz domain-containing protein. (426 aa)
	A0A090MWW1	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (433 aa)
	A0A090LT82	annotation not available (437 aa)
	A0A090LNT1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (665 aa)
	A0A090LIF9	La-related protein 1. (645 aa)
	A0A090LHW8	NAD-dependent protein deacetylase sirtuin-6. (277 aa)
	A0A090LBW3	La-related protein 1. (1117 aa)
	A0A090MYC8	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090MY41	Roquin-1. (767 aa)
	A0A090LA24	Ataxin-2 homolog. (1125 aa)
	A0A090L754	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090L1L1	Uncharacterized protein. (463 aa)
	A0A090L192	Dead box protein 80. (442 aa)
	A0A090KYP0	Uncharacterized protein. (321 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KX09	A0A090L192	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	Dead box protein 80.	0.476
A0A090KX09	A0A090L754	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1.	0.688
A0A090KX09	A0A090LA24	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	Ataxin-2 homolog.	0.488
A0A090KX09	A0A090LNT1	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.740
A0A090KX09	A0A090MWW1	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.698
A0A090KX09	A0A090MXL9	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	Btz domain-containing protein.	0.679
A0A090KX09	A0A090MYC8	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1.	0.688
A0A090KZM7	A0A090LNT1	La-related protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.615
A0A090L192	A0A090KX09	Dead box protein 80.	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	0.476
A0A090L192	A0A090LNT1	Dead box protein 80.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.576
A0A090L192	A0A090MWW1	Dead box protein 80.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.628
A0A090L754	A0A090KX09	U6 snRNA-associated Sm-like protein LSm1.	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	0.688
A0A090L754	A0A090LNT1	U6 snRNA-associated Sm-like protein LSm1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.637
A0A090L754	A0A090MWW1	U6 snRNA-associated Sm-like protein LSm1.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.964
A0A090LA24	A0A090KX09	Ataxin-2 homolog.	ATP-dependent RNA helicase DDX3Y; Belongs to the DEAD box helicase family.	0.488
A0A090LA24	A0A090LNT1	Ataxin-2 homolog.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.955
A0A090LA24	A0A090MWW1	Ataxin-2 homolog.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.948
A0A090LA24	A0A090MY41	Ataxin-2 homolog.	Roquin-1.	0.551
A0A090LBW3	A0A090LNT1	La-related protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.615
A0A090LIF9	A0A090LNT1	La-related protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.615