47 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LI33	M7GpppN-mRNA hydrolase. (163 aa)
	A0A090KXW2	Cth1. (465 aa)
	A0A090KZK0	Uncharacterized protein. (78 aa)
	A0A090KZW3	Exosome complex component RRP45. (299 aa)
	A0A090L0P8	Zinc finger, CCCH-type domain-containing protein. (254 aa)
	A0A090L105	Exosome complex component RRP42. (324 aa)
	A0A090N0Z7	Uncharacterized protein. (640 aa)
	A0A090MZV3	annotation not available (341 aa)
	A0A090MZ60	Uncharacterized protein. (144 aa)
	A0A090MYD5	E3 ubiquitin-protein ligase TRIM71. (1097 aa)
	A0A090MYC9	Exosome complex component RRP4. (299 aa)
	A0A090MYC8	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090MY41	Roquin-1. (767 aa)
	A0A090MXZ6	Pop2. (304 aa)
	A0A090MXL3	K Homology domain and K Homology domain, type 1-containing protein. (586 aa)
	A0A090MX67	Uncharacterized protein. (307 aa)
	A0A090MWW1	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (433 aa)
	A0A090LQ37	Zinc finger, nanos-type domain-containing protein; Belongs to the nanos family. (195 aa)
	A0A090LP87	Cth1. (472 aa)
	A0A090LNQ0	Uncharacterized protein. (653 aa)
	A0A090LNP8	M7GpppN-mRNA hydrolase. (514 aa)
	A0A090LN11	Tristetraprolin. (325 aa)
	A0A090LJM6	CCR4-NOT transcription complex subunit 1. (2066 aa)
	A0A090LJC8	Sulfhydryl oxidase. (732 aa)
	A0A090LJ31	Decapping protein 1. (298 aa)
	A0A090LJ05	PAB-dependent poly(A)-specific ribonuclease subunit PAN3. (598 aa)
	A0A090L1N8	Fragile X mental retardation syndrome-related protein 1. (515 aa)
	A0A090L1W1	Translational activator GCN1. (2609 aa)
	A0A090L365	Topoisomerase II-associated protein PAT1 family-containing protein. (677 aa)
	A0A090L4G6	Cth1. (475 aa)
	A0A090L5C8	Protein Smaug. (491 aa)
	A0A090L6X1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (510 aa)
	A0A090L754	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090L7L0	DNA-directed RNA polymerase II subunit RPB4. (146 aa)
	A0A090L8B5	Poly(A)-specific ribonuclease PARN. (645 aa)
	A0A090L8J6	Exosome complex component RRP40. (237 aa)
	A0A090L8W8	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (75 aa)
	A0A090L9V3	60S ribosomal protein L13a. (202 aa)
	A0A090LAT3	CCR4-NOT transcription complex subunit 2. (359 aa)
	A0A090LAY2	Cell differentiation protein RCD1 homolog. (323 aa)
	A0A090LC45	M7GpppX diphosphatase. (295 aa)
	A0A090LCS9	CCR4-NOT transcription complex subunit 3. (685 aa)
	A0A090LDG9	annotation not available (637 aa)
	A0A090LF07	Protein alan shepard. (556 aa)
	A0A090LFD3	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein. (369 aa)
	A0A090LFK8	Brain tumor protein. (887 aa)
	A0A090LIQ5	Uncharacterized protein. (897 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KXW2	A0A090LI33	Cth1.	M7GpppN-mRNA hydrolase.	0.684
A0A090KXW2	A0A090LJ31	Cth1.	Decapping protein 1.	0.711
A0A090KXW2	A0A090LJM6	Cth1.	CCR4-NOT transcription complex subunit 1.	0.612
A0A090KXW2	A0A090LNP8	Cth1.	M7GpppN-mRNA hydrolase.	0.684
A0A090KXW2	A0A090MWW1	Cth1.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.490
A0A090KXW2	A0A090MX67	Cth1.	Uncharacterized protein.	0.793
A0A090KXW2	A0A090MXZ6	Cth1.	Pop2.	0.496
A0A090KXW2	A0A090MYC9	Cth1.	Exosome complex component RRP4.	0.631
A0A090KZK0	A0A090L754	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1.	0.915
A0A090KZK0	A0A090LAT3	Uncharacterized protein.	CCR4-NOT transcription complex subunit 2.	0.794
A0A090KZK0	A0A090LCS9	Uncharacterized protein.	CCR4-NOT transcription complex subunit 3.	0.889
A0A090KZK0	A0A090LI33	Uncharacterized protein.	M7GpppN-mRNA hydrolase.	0.913
A0A090KZK0	A0A090LIQ5	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A090KZK0	A0A090LJ31	Uncharacterized protein.	Decapping protein 1.	0.927
A0A090KZK0	A0A090LJM6	Uncharacterized protein.	CCR4-NOT transcription complex subunit 1.	0.817
A0A090KZK0	A0A090LNP8	Uncharacterized protein.	M7GpppN-mRNA hydrolase.	0.913
A0A090KZK0	A0A090MWW1	Uncharacterized protein.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.964
A0A090KZK0	A0A090MXZ6	Uncharacterized protein.	Pop2.	0.896
A0A090KZK0	A0A090MY41	Uncharacterized protein.	Roquin-1.	0.529
A0A090KZK0	A0A090MYC8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1.	0.915