12 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090MXW5	JNK-interacting protein 3. (1205 aa)
	A0A090LD50	Craniofacial development protein 1. (186 aa)
	A0A090LH17	annotation not available (375 aa)
	A0A090MYS7	No mechanoreceptor potential B. (837 aa)
	A0A090LM83	Belongs to the protein kinase superfamily. (283 aa)
	A0A090LP37	Uncharacterized protein. (2305 aa)
	A0A090LP82	Calsyntenin-1. (991 aa)
	A0A090LQB2	Kinesin light chain. (588 aa)
	A0A090KY97	Unc-76. (452 aa)
	A0A090L377	Aurora kinase B; Belongs to the protein kinase superfamily. (295 aa)
	A0A090LBF2	Armadillo-like helical domain and Armadillo-type fold domain-containing protein. (751 aa)
	A0A090LD34	annotation not available (297 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KY97	A0A090LQB2	Unc-76.	Kinesin light chain.	0.462
A0A090L377	A0A090LQB2	Aurora kinase B; Belongs to the protein kinase superfamily.	Kinesin light chain.	0.497
A0A090L377	A0A090MYS7	Aurora kinase B; Belongs to the protein kinase superfamily.	No mechanoreceptor potential B.	0.505
A0A090LBF2	A0A090LQB2	Armadillo-like helical domain and Armadillo-type fold domain-containing protein.	Kinesin light chain.	0.754
A0A090LBF2	A0A090MYS7	Armadillo-like helical domain and Armadillo-type fold domain-containing protein.	No mechanoreceptor potential B.	0.862
A0A090LD34	A0A090LQB2	annotation not available	Kinesin light chain.	0.497
A0A090LD34	A0A090MYS7	annotation not available	No mechanoreceptor potential B.	0.505
A0A090LH17	A0A090LQB2	annotation not available	Kinesin light chain.	0.497
A0A090LH17	A0A090MYS7	annotation not available	No mechanoreceptor potential B.	0.505
A0A090LM83	A0A090LQB2	Belongs to the protein kinase superfamily.	Kinesin light chain.	0.497
A0A090LM83	A0A090MYS7	Belongs to the protein kinase superfamily.	No mechanoreceptor potential B.	0.505
A0A090LP37	A0A090LQB2	Uncharacterized protein.	Kinesin light chain.	0.574
A0A090LP37	A0A090MYS7	Uncharacterized protein.	No mechanoreceptor potential B.	0.603
A0A090LP82	A0A090LQB2	Calsyntenin-1.	Kinesin light chain.	0.868
A0A090LP82	A0A090MYS7	Calsyntenin-1.	No mechanoreceptor potential B.	0.406
A0A090LQB2	A0A090KY97	Kinesin light chain.	Unc-76.	0.462
A0A090LQB2	A0A090L377	Kinesin light chain.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.497
A0A090LQB2	A0A090LBF2	Kinesin light chain.	Armadillo-like helical domain and Armadillo-type fold domain-containing protein.	0.754
A0A090LQB2	A0A090LD34	Kinesin light chain.	annotation not available	0.497
A0A090LQB2	A0A090LH17	Kinesin light chain.	annotation not available	0.497