(14 nodes) Nuclear DNA replication network (Strongyloides ratti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L7F3	annotation not available (646 aa)
	A0A090L9U3	DNA helicase; Belongs to the MCM family. (811 aa)
	A0A090LA78	Sld5 domain-containing protein. (131 aa)
	A0A090LCP1	DNA helicase; Belongs to the MCM family. (795 aa)
	A0A090LFA8	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (382 aa)
	A0A090LI71	DNA helicase; Belongs to the MCM family. (809 aa)
	A0A090LIG2	DNA ligase. (621 aa)
	A0A090LJJ3	DNA polymerase. (1425 aa)
	A0A090LJZ0	DNA repair protein Rad51 homolog; Belongs to the RecA family. (333 aa)
	A0A090LP26	DNA helicase; Belongs to the MCM family. (763 aa)
	A0A090LQF1	CDT1 Geminin-binding domain-like-containing protein. (729 aa)
	A0A090L4Z7	Uncharacterized protein. (408 aa)
	A0A090L6K6	Cell division control protein 45 homolog. (563 aa)
	A0A090L1Q6	Protein RTF2 homolog. (224 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L4Z7	A0A090L6K6	Uncharacterized protein.	Cell division control protein 45 homolog.	0.443
A0A090L4Z7	A0A090L9U3	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.747
A0A090L4Z7	A0A090LCP1	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.481
A0A090L4Z7	A0A090LI71	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.421
A0A090L4Z7	A0A090LP26	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.538
A0A090L6K6	A0A090L4Z7	Cell division control protein 45 homolog.	Uncharacterized protein.	0.443
A0A090L6K6	A0A090L7F3	Cell division control protein 45 homolog.	annotation not available	0.855
A0A090L6K6	A0A090L9U3	Cell division control protein 45 homolog.	DNA helicase; Belongs to the MCM family.	0.999
A0A090L6K6	A0A090LA78	Cell division control protein 45 homolog.	Sld5 domain-containing protein.	0.998
A0A090L6K6	A0A090LCP1	Cell division control protein 45 homolog.	DNA helicase; Belongs to the MCM family.	0.999
A0A090L6K6	A0A090LFA8	Cell division control protein 45 homolog.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.692
A0A090L6K6	A0A090LI71	Cell division control protein 45 homolog.	DNA helicase; Belongs to the MCM family.	0.999
A0A090L6K6	A0A090LIG2	Cell division control protein 45 homolog.	DNA ligase.	0.709
A0A090L6K6	A0A090LJJ3	Cell division control protein 45 homolog.	DNA polymerase.	0.978
A0A090L6K6	A0A090LJZ0	Cell division control protein 45 homolog.	DNA repair protein Rad51 homolog; Belongs to the RecA family.	0.692
A0A090L6K6	A0A090LP26	Cell division control protein 45 homolog.	DNA helicase; Belongs to the MCM family.	0.999
A0A090L6K6	A0A090LQF1	Cell division control protein 45 homolog.	CDT1 Geminin-binding domain-like-containing protein.	0.977
A0A090L7F3	A0A090L6K6	annotation not available	Cell division control protein 45 homolog.	0.855
A0A090L7F3	A0A090L9U3	annotation not available	DNA helicase; Belongs to the MCM family.	0.829
A0A090L7F3	A0A090LCP1	annotation not available	DNA helicase; Belongs to the MCM family.	0.573