16 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LH78	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (484 aa)
	A0A090LUZ5	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (537 aa)
	A0A090LTJ2	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (655 aa)
	A0A090LT30	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (454 aa)
	A0A090LQ33	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (364 aa)
	A0A090LNH1	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (413 aa)
	A0A090LMR2	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (370 aa)
	A0A090LKL4	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (411 aa)
	A0A090LJI5	annotation not available (935 aa)
	A0A090LHR9	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (530 aa)
	A0A090L5Y3	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (537 aa)
	A0A090L634	Uncharacterized protein. (367 aa)
	A0A090LCZ5	Belongs to the ligand-gated ion channel (TC 1.A.9) family. (417 aa)
	A0A090LE90	Uncharacterized protein. (127 aa)
	A0A090LG03	Chloride intracellular channel. (297 aa)
	A0A090LH59	PAN-1 domain and Apple-like domain-containing protein. (504 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L5Y3	A0A090LH59	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	PAN-1 domain and Apple-like domain-containing protein.	0.436
A0A090L5Y3	A0A090LH78	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.497
A0A090L5Y3	A0A090LHR9	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090L5Y3	A0A090LKL4	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.465
A0A090L5Y3	A0A090LT30	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.446
A0A090LCZ5	A0A090LH59	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	PAN-1 domain and Apple-like domain-containing protein.	0.412
A0A090LCZ5	A0A090LH78	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LCZ5	A0A090LHR9	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LCZ5	A0A090LKL4	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LCZ5	A0A090LT30	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LH59	A0A090L5Y3	PAN-1 domain and Apple-like domain-containing protein.	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.436
A0A090LH59	A0A090LCZ5	PAN-1 domain and Apple-like domain-containing protein.	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LH59	A0A090LJI5	PAN-1 domain and Apple-like domain-containing protein.	annotation not available	0.412
A0A090LH78	A0A090L5Y3	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.497
A0A090LH78	A0A090LCZ5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LH78	A0A090LJI5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	annotation not available	0.412
A0A090LHR9	A0A090L5Y3	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Gamma-aminobutyric acid receptor subunit beta-like; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LHR9	A0A090LCZ5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.412
A0A090LHR9	A0A090LJI5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	annotation not available	0.412
A0A090LJI5	A0A090LH59	annotation not available	PAN-1 domain and Apple-like domain-containing protein.	0.412