98 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L6N2	Ecotropic viral integration site 5 ortholog. (1044 aa)
	A0A090MXZ8	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (382 aa)
	A0A090MYM8	C2 domain-containing protein. (707 aa)
	A0A090MYP9	Prohibitin. (272 aa)
	A0A090MYR4	Putative ribosomal RNA methyltransferase NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (873 aa)
	A0A090MYY7	Guanine nucleotide-binding protein subunit beta-5. (356 aa)
	A0A090MZN6	Diacylglycerol kinase. (1505 aa)
	A0A090MZR7	Nuclear factor I. (491 aa)
	A0A090MZS3	Band 7 protein family and Stomatin family-containing protein. (387 aa)
	A0A090MZW0	Intraflagellar transport protein 80 homolog. (764 aa)
	A0A090N006	Band 7 protein family and Stomatin family-containing protein. (273 aa)
	A0A090N032	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (442 aa)
	A0A090N051	LP21163p. (744 aa)
	A0A090N071	Prohibitin. (296 aa)
	A0A090N0I5	Belongs to the G-protein coupled receptor 1 family. (400 aa)
	A0A090N0P7	RUN domain-containing protein. (614 aa)
	A0A090N0P8	Fibroblast growth factor family and Cytokine, IL-1-like family-containing protein; Belongs to the heparin-binding growth factors family. (163 aa)
	A0A090N0R7	Guanylate cyclase. (1521 aa)
	A0A090N0Y2	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1285 aa)
	A0A090KW87	AT02583p. (541 aa)
	A0A090KWE5	Zinc finger, SWIM-type domain-containing protein. (1571 aa)
	A0A090KZ80	Band 7 protein family and Stomatin family-containing protein. (455 aa)
	A0A090KZI1	Uncharacterized protein. (890 aa)
	A0A090L1E1	Uncharacterized protein. (98 aa)
	A0A090L246	annotation not available (325 aa)
	A0A090L2C9	Rim. (1735 aa)
	A0A090L2H5	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (702 aa)
	A0A090L334	DM DNA-binding domain-containing protein. (193 aa)
	A0A090L3G5	Uncharacterized protein. (395 aa)
	A0A090L4J5	Amontillado; Belongs to the peptidase S8 family. (663 aa)
	A0A090L4K1	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (655 aa)
	A0A090L505	Band 7 protein family and Stomatin family-containing protein. (288 aa)
	A0A090L712	Core binding factor, beta subunit family-containing protein. (142 aa)
	A0A090L793	annotation not available (708 aa)
	A0A090L7G2	Ubiquitin carboxyl-terminal hydrolase. (481 aa)
	A0A090L7X0	MIP02973p. (519 aa)
	A0A090L894	WASp. (434 aa)
	A0A090L8D2	FI21212p1. (467 aa)
	A0A090L933	Vacuolar protein sorting-associated protein 51 homolog. (714 aa)
	A0A090L966	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1272 aa)
	A0A090L994	Potassium voltage-gated channel subfamily H member 6. (1092 aa)
	A0A090L9N3	Belongs to the G-protein coupled receptor 1 family. (607 aa)
	A0A090LAE6	Syntrophin-like 1. (445 aa)
	A0A090LAE9	Uncharacterized protein. (628 aa)
	A0A090LBM0	Guanine nucleotide-binding protein subunit alpha-11. (401 aa)
	A0A090LBW5	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4. (292 aa)
	A0A090LC70	GH10531p. (552 aa)
	A0A090LCL3	Loss of heterozygosity 12 chromosomal region 1 protein. (221 aa)
	A0A090LCT0	Arfaptin homology (AH) domain and Arfaptin homology (AH) domain/BAR domain-containing protein. (491 aa)
	A0A090LCV3	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (693 aa)
	A0A090LCW7	Nicotinic acetylcholine receptor beta 3 (Dbeta3) subunit. (491 aa)
	A0A090LCZ9	Battenin. (427 aa)
	A0A090LD21	Vesicular glutamate transporter. (610 aa)
	A0A090LDF9	Membrane-associated protein Hem. (1138 aa)
	A0A090LDH7	Phosphodiesterase. (1437 aa)
	A0A090LDM4	NADP-dependent oxidoreductase domain-containing protein. (418 aa)
	A0A090LE20	5-demethoxyubiquinone hydroxylase, mitochondrial; Catalyzes the hydroxylation of 2-polyprenyl-3-methyl-6- methoxy-1,4-benzoquinol (DMQH2) during ubiquinone biosynthesis. Has also a structural role in the COQ enzyme complex, stabilizing other COQ polypeptides. Involved in lifespan determination in a ubiquinone- independent manner. (217 aa)
	A0A090LG65	Vacuolar protein sorting-associated protein 53 homolog. (1336 aa)
	A0A090LGA4	Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein. (1086 aa)
	A0A090LGR6	Vacuolar protein sorting-associated protein 52 homolog. (810 aa)
	A0A090LH44	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (487 aa)
	A0A090LHD6	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (442 aa)
	A0A090LHL9	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (689 aa)
	A0A090LI61	MIP16420p. (141 aa)
	A0A090LIC1	Protein TSSC1. (354 aa)
	A0A090LIX2	Unc-13. (1439 aa)
	A0A090LJM1	Protein mago nashi. (149 aa)
	A0A090LK69	Serine/threonine-protein kinase TAO3. (1108 aa)
	A0A090LKA2	Putative transcription factor SOX-14. (436 aa)
	A0A090LKN1	Uncharacterized protein. (481 aa)
	A0A090LKU0	Synembryn. (631 aa)
	A0A090LL02	Battenin. (453 aa)
	A0A090LL37	Aminopeptidase. (964 aa)
	A0A090LLN1	Contactin. (1256 aa)
	A0A090LM57	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (645 aa)
	A0A090LM91	Tetraspanin. (400 aa)
	A0A090LMH2	FCH domain and SH3 domain-containing protein. (611 aa)
	A0A090LMM7	Tequila; Belongs to the peptidase S1 family. (750 aa)
	A0A090LMT9	Dual specificity mitogen-activated protein kinase kinase 6; Belongs to the protein kinase superfamily. (341 aa)
	A0A090LN15	Uncharacterized protein. (85 aa)
	A0A090LN76	G-protein-signaling modulator 1. (706 aa)
	A0A090LND4	Muscarinic acetylcholine receptor DM1; Belongs to the G-protein coupled receptor 1 family. (647 aa)
	A0A090LNS9	Ras-related protein Rab-3D. (346 aa)
	A0A090LNT8	Band 7 protein family and Stomatin family-containing protein. (291 aa)
	A0A090LPB2	Uncharacterized protein. (865 aa)
	A0A090LQP2	Protein cornichon. (145 aa)
	A0A090LRP2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1401 aa)
	A0A090LRQ6	Uncharacterized protein. (140 aa)
	A0A090LSG9	Mitogen-activated protein kinase kinase kinase 5. (1490 aa)
	A0A090LSZ7	AT31531p. (969 aa)
	A0A090LTU5	Peptidase M1, membrane alanine aminopeptidase, N-terminal domain-containing protein. (1169 aa)
	A0A090LUH8	Tetraspanin. (303 aa)
	A0A090LUS5	annotation not available (1878 aa)
	A0A090MTT6	Band 7 protein family and Stomatin family-containing protein. (503 aa)
	A0A090MU41	Uncharacterized protein. (114 aa)
	A0A090MVH7	Dopamine D2-like receptor; Belongs to the G-protein coupled receptor 1 family. (1138 aa)
	A0A090MWR1	Doublesex-and mab-3-related transcription factor 3. (267 aa)
	A0A090MX12	Insulin-like growth factor 1 receptor. (1363 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KW87	A0A090L2C9	AT02583p.	Rim.	0.568
A0A090KW87	A0A090L7G2	AT02583p.	Ubiquitin carboxyl-terminal hydrolase.	0.992
A0A090KW87	A0A090LK69	AT02583p.	Serine/threonine-protein kinase TAO3.	0.474
A0A090KW87	A0A090MU41	AT02583p.	Uncharacterized protein.	0.468
A0A090KW87	A0A090N032	AT02583p.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.561
A0A090KZ80	A0A090L2H5	Band 7 protein family and Stomatin family-containing protein.	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.656
A0A090KZ80	A0A090L3G5	Band 7 protein family and Stomatin family-containing protein.	Uncharacterized protein.	0.576
A0A090KZ80	A0A090L4K1	Band 7 protein family and Stomatin family-containing protein.	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.612
A0A090KZ80	A0A090LHD6	Band 7 protein family and Stomatin family-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.523
A0A090KZI1	A0A090L2H5	Uncharacterized protein.	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.656
A0A090KZI1	A0A090L3G5	Uncharacterized protein.	Uncharacterized protein.	0.576
A0A090KZI1	A0A090L4K1	Uncharacterized protein.	Na+ channel, amiloride-sensitive family and Degenerin family-containing protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.612
A0A090KZI1	A0A090LHD6	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.523
A0A090L1E1	A0A090LBM0	Uncharacterized protein.	Guanine nucleotide-binding protein subunit alpha-11.	0.807
A0A090L1E1	A0A090LN76	Uncharacterized protein.	G-protein-signaling modulator 1.	0.421
A0A090L1E1	A0A090MYY7	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta-5.	0.406
A0A090L246	A0A090L712	annotation not available	Core binding factor, beta subunit family-containing protein.	0.995
A0A090L246	A0A090LKA2	annotation not available	Putative transcription factor SOX-14.	0.702
A0A090L246	A0A090MX12	annotation not available	Insulin-like growth factor 1 receptor.	0.494
A0A090L2C9	A0A090KW87	Rim.	AT02583p.	0.568