(9 nodes) Dendrite self-avoidance network (Strongyloides ratti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LFM7	GH07373p. (617 aa)
	A0A090L9C7	Uncharacterized protein. (550 aa)
	A0A090LC46	annotation not available (257 aa)
	A0A090N0N1	Neuroglian. (820 aa)
	A0A090MWS2	annotation not available (329 aa)
	A0A090LUH4	Uncharacterized protein. (831 aa)
	A0A090LRY8	Neuroglian. (1345 aa)
	A0A090LLN1	Contactin. (1256 aa)
	A0A090LG56	Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family. (721 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L9C7	A0A090LFM7	Uncharacterized protein.	GH07373p.	0.732
A0A090L9C7	A0A090LLN1	Uncharacterized protein.	Contactin.	0.498
A0A090L9C7	A0A090LRY8	Uncharacterized protein.	Neuroglian.	0.606
A0A090L9C7	A0A090N0N1	Uncharacterized protein.	Neuroglian.	0.606
A0A090LC46	A0A090LFM7	annotation not available	GH07373p.	0.470
A0A090LC46	A0A090LLN1	annotation not available	Contactin.	0.546
A0A090LC46	A0A090LRY8	annotation not available	Neuroglian.	0.535
A0A090LC46	A0A090LUH4	annotation not available	Uncharacterized protein.	0.566
A0A090LC46	A0A090N0N1	annotation not available	Neuroglian.	0.535
A0A090LFM7	A0A090L9C7	GH07373p.	Uncharacterized protein.	0.732
A0A090LFM7	A0A090LC46	GH07373p.	annotation not available	0.470
A0A090LFM7	A0A090LG56	GH07373p.	Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family.	0.576
A0A090LFM7	A0A090LLN1	GH07373p.	Contactin.	0.468
A0A090LFM7	A0A090LRY8	GH07373p.	Neuroglian.	0.591
A0A090LFM7	A0A090LUH4	GH07373p.	Uncharacterized protein.	0.437
A0A090LFM7	A0A090N0N1	GH07373p.	Neuroglian.	0.591
A0A090LG56	A0A090LFM7	Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family.	GH07373p.	0.576
A0A090LLN1	A0A090L9C7	Contactin.	Uncharacterized protein.	0.498
A0A090LLN1	A0A090LC46	Contactin.	annotation not available	0.546
A0A090LLN1	A0A090LFM7	Contactin.	GH07373p.	0.468