25 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LG64	RNA-binding motif protein, X-linked 2. (301 aa)
	A0A090LGT9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	A0A090LHQ1	Uncharacterized protein. (172 aa)
	A0A090LI89	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm2. (428 aa)
	A0A090LDE1	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	A0A090LD46	Uncharacterized protein. (350 aa)
	A0A090LB43	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (91 aa)
	A0A090L9W1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	A0A090L8I4	PHF5-like family and Gamma-tubulin complex component protein family-containing protein. (931 aa)
	A0A090L6Y4	U4/U6 small nuclear ribonucleoprotein Prp31. (524 aa)
	A0A090L5D1	U2 small nuclear ribonucleoprotein A. (227 aa)
	A0A090L1W7	annotation not available (464 aa)
	A0A090L339	Small nuclear ribonucleoprotein Sm D2. (116 aa)
	A0A090L1K1	Peptidyl-prolyl cis-trans isomerase CWC27 homolog. (304 aa)
	A0A090L1F5	Splicing factor 3B subunit 2. (506 aa)
	A0A090KWR0	Splicing factor 3B subunit 6-like protein. (136 aa)
	A0A090LK60	PTB/PI domain and Pleckstrin homology-like domain-containing protein. (295 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090MUW1	Pre-mRNA-splicing factor 38B. (293 aa)
	A0A090LRB7	WW domain-binding protein 4. (387 aa)
	A0A090LQ13	Uncharacterized protein. (296 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090LEK5	Small nuclear ribonucleoprotein G. (77 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090KWR0	A0A090L1F5	A0A090KWR0	A0A090L1F5	Splicing factor 3B subunit 6-like protein.	Splicing factor 3B subunit 2.	0.993
A0A090KWR0	A0A090L1K1	A0A090KWR0	A0A090L1K1	Splicing factor 3B subunit 6-like protein.	Peptidyl-prolyl cis-trans isomerase CWC27 homolog.	0.676
A0A090KWR0	A0A090L1W7	A0A090KWR0	A0A090L1W7	Splicing factor 3B subunit 6-like protein.	annotation not available	0.625
A0A090KWR0	A0A090L339	A0A090KWR0	A0A090L339	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein Sm D2.	0.930
A0A090KWR0	A0A090L5D1	A0A090KWR0	A0A090L5D1	Splicing factor 3B subunit 6-like protein.	U2 small nuclear ribonucleoprotein A.	0.954
A0A090KWR0	A0A090L6Y4	A0A090KWR0	A0A090L6Y4	Splicing factor 3B subunit 6-like protein.	U4/U6 small nuclear ribonucleoprotein Prp31.	0.591
A0A090KWR0	A0A090L8I4	A0A090KWR0	A0A090L8I4	Splicing factor 3B subunit 6-like protein.	PHF5-like family and Gamma-tubulin complex component protein family-containing protein.	0.999
A0A090KWR0	A0A090L9W1	A0A090KWR0	A0A090L9W1	Splicing factor 3B subunit 6-like protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.638
A0A090KWR0	A0A090LB43	A0A090KWR0	A0A090LB43	Splicing factor 3B subunit 6-like protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
A0A090KWR0	A0A090LDE1	A0A090KWR0	A0A090LDE1	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein Sm D3.	0.931
A0A090KWR0	A0A090LEK5	A0A090KWR0	A0A090LEK5	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein G.	0.974
A0A090KWR0	A0A090LG64	A0A090KWR0	A0A090LG64	Splicing factor 3B subunit 6-like protein.	RNA-binding motif protein, X-linked 2.	0.602
A0A090KWR0	A0A090LGT9	A0A090KWR0	A0A090LGT9	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.944
A0A090KWR0	A0A090LI89	A0A090KWR0	A0A090LI89	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.953
A0A090KWR0	A0A090LJP5	A0A090KWR0	A0A090LJP5	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm2.	0.612
A0A090KWR0	A0A090LK60	A0A090KWR0	A0A090LK60	Splicing factor 3B subunit 6-like protein.	PTB/PI domain and Pleckstrin homology-like domain-containing protein.	0.953
A0A090KWR0	A0A090LRB7	A0A090KWR0	A0A090LRB7	Splicing factor 3B subunit 6-like protein.	WW domain-binding protein 4.	0.591
A0A090KWR0	LSM3	A0A090KWR0	A0A090LPD9	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.697
A0A090KWR0	LSM4	A0A090KWR0	A0A090LG17	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.711
A0A090KWR0	LSM8	A0A090KWR0	A0A090N0A3	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.638