18 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090MZJ5	Casein kinase I; Belongs to the protein kinase superfamily. (331 aa)
	A0A090L0Z5	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (315 aa)
	A0A090L2X3	annotation not available (358 aa)
	A0A090L343	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein. (357 aa)
	A0A090L873	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (431 aa)
	A0A090L8B6	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (388 aa)
	A0A090L9T8	Uncharacterized protein. (829 aa)
	A0A090LCH4	annotation not available (384 aa)
	A0A090LD99	Armadillo-like helical domain and Armadillo-type fold domain-containing protein. (943 aa)
	A0A090LF79	Si:ch211-81i17.1. (674 aa)
	A0A090LF93	Casein kinase I; Belongs to the protein kinase superfamily. (311 aa)
	A0A090LG08	annotation not available (634 aa)
	A0A090LGJ7	Nephrocystin-4. (1311 aa)
	A0A090LN55	Belongs to the protein kinase superfamily. (444 aa)
	A0A090LUE9	Protein bicaudal C homolog 1. (740 aa)
	A0A090LUQ2	annotation not available (306 aa)
	A0A090MTX3	Uncharacterized protein. (1013 aa)
	A0A090MTY6	Band4.1 inhibitor LRP interactor. (419 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L0Z5	A0A090L343	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	0.448
A0A090L0Z5	A0A090LCH4	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.448
A0A090L0Z5	A0A090LD99	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Armadillo-like helical domain and Armadillo-type fold domain-containing protein.	0.821
A0A090L0Z5	A0A090LF93	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Casein kinase I; Belongs to the protein kinase superfamily.	0.708
A0A090L0Z5	A0A090LG08	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.845
A0A090L0Z5	A0A090LUQ2	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.532
A0A090L0Z5	A0A090MTX3	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.403
A0A090L0Z5	A0A090MZJ5	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Casein kinase I; Belongs to the protein kinase superfamily.	0.705
A0A090L343	A0A090L0Z5	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.448
A0A090L343	A0A090L873	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.448
A0A090L343	A0A090L8B6	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.448
A0A090L343	A0A090LN55	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	Belongs to the protein kinase superfamily.	0.448
A0A090L873	A0A090L343	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Leucine-rich repeat and Leucine-rich repeat, typical subtype-containing protein.	0.448
A0A090L873	A0A090LCH4	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.448
A0A090L873	A0A090LD99	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Armadillo-like helical domain and Armadillo-type fold domain-containing protein.	0.905
A0A090L873	A0A090LF93	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Casein kinase I; Belongs to the protein kinase superfamily.	0.702
A0A090L873	A0A090LG08	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.762
A0A090L873	A0A090LUQ2	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	annotation not available	0.590
A0A090L873	A0A090MTX3	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.403
A0A090L873	A0A090MZJ5	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	Casein kinase I; Belongs to the protein kinase superfamily.	0.676