39 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LDR7	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (531 aa)
	A0A090LDS8	annotation not available (508 aa)
	A0A090LDW5	Protein C21orf2. (411 aa)
	A0A090LGJ7	Nephrocystin-4. (1311 aa)
	A0A090LGP2	Guanine nucleotide-binding protein G(K) subunit alpha. (360 aa)
	A0A090LHJ8	Bardet-Biedl syndrome 7 protein. (516 aa)
	A0A090LJ24	Phytanoyl-CoA dioxygenase, peroxisomal. (312 aa)
	A0A090LKC1	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily. (347 aa)
	A0A090LL11	Intraflagellar transport protein 74 homolog. (603 aa)
	A0A090LL49	Intraflagellar transport protein 81 homolog. (627 aa)
	A0A090LL55	Intraflagellar transport protein 140 homolog. (1031 aa)
	A0A090LLE7	Tetratricopeptide repeat protein 8. (511 aa)
	A0A090LLH4	Nanchung. (864 aa)
	A0A090LLK7	annotation not available (413 aa)
	A0A090LN82	Clc protein-like family-containing protein. (309 aa)
	A0A090LN85	Intraflagellar transport protein 122 homolog. (1157 aa)
	A0A090LPB7	Inactive; Belongs to the transient receptor (TC 1.A.4) family. (1026 aa)
	A0A090LQL7	Nanchung. (849 aa)
	A0A090MVV2	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (221 aa)
	A0A090MWA4	Nanchung; Belongs to the transient receptor (TC 1.A.4) family. (737 aa)
	A0A090MX12	Insulin-like growth factor 1 receptor. (1363 aa)
	A0A090L091	Frizzled domain-containing protein. (1369 aa)
	A0A090MXH9	Tetratricopeptide-like helical domain-containing protein. (673 aa)
	A0A090MYS2	annotation not available (802 aa)
	A0A090MYS7	No mechanoreceptor potential B. (837 aa)
	A0A090MZM6	Intraflagellar transport protein 20 homolog. (130 aa)
	A0A090MZQ7	Cytoplasmic dynein 2 light intermediate chain 1. (362 aa)
	A0A090MZW0	Intraflagellar transport protein 80 homolog. (764 aa)
	A0A090N003	Intraflagellar transport protein 172 homolog. (1741 aa)
	A0A090N0R7	Guanylate cyclase. (1521 aa)
	A0A090L692	Bardet-Biedl syndrome 5 protein homolog. (349 aa)
	A0A090L6P2	WD repeat domain 19. (685 aa)
	A0A090L8C4	Tubulin-specific chaperone C. (505 aa)
	A0A090L8P6	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (199 aa)
	A0A090L9L8	Cdc14. (400 aa)
	A0A090LBF2	Armadillo-like helical domain and Armadillo-type fold domain-containing protein. (751 aa)
	A0A090LBJ9	Uncharacterized protein. (979 aa)
	A0A090LC36	annotation not available (1770 aa)
	A0A090LCQ2	Uncharacterized protein. (384 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L091	A0A090L692	Frizzled domain-containing protein.	Bardet-Biedl syndrome 5 protein homolog.	0.636
A0A090L091	A0A090LCQ2	Frizzled domain-containing protein.	Uncharacterized protein.	0.483
A0A090L091	A0A090LGP2	Frizzled domain-containing protein.	Guanine nucleotide-binding protein G(K) subunit alpha.	0.706
A0A090L091	A0A090LHJ8	Frizzled domain-containing protein.	Bardet-Biedl syndrome 7 protein.	0.662
A0A090L091	A0A090LL11	Frizzled domain-containing protein.	Intraflagellar transport protein 74 homolog.	0.514
A0A090L091	A0A090LLE7	Frizzled domain-containing protein.	Tetratricopeptide repeat protein 8.	0.584
A0A090L091	A0A090MX12	Frizzled domain-containing protein.	Insulin-like growth factor 1 receptor.	0.400
A0A090L091	A0A090MYS7	Frizzled domain-containing protein.	No mechanoreceptor potential B.	0.617
A0A090L091	A0A090MZM6	Frizzled domain-containing protein.	Intraflagellar transport protein 20 homolog.	0.425
A0A090L692	A0A090L091	Bardet-Biedl syndrome 5 protein homolog.	Frizzled domain-containing protein.	0.636
A0A090L692	A0A090LHJ8	Bardet-Biedl syndrome 5 protein homolog.	Bardet-Biedl syndrome 7 protein.	0.986
A0A090L692	A0A090LL11	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 74 homolog.	0.638
A0A090L692	A0A090LL49	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 81 homolog.	0.526
A0A090L692	A0A090LL55	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 140 homolog.	0.532
A0A090L692	A0A090LLE7	Bardet-Biedl syndrome 5 protein homolog.	Tetratricopeptide repeat protein 8.	0.986
A0A090L692	A0A090LN85	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 122 homolog.	0.515
A0A090L692	A0A090MYS7	Bardet-Biedl syndrome 5 protein homolog.	No mechanoreceptor potential B.	0.771
A0A090L692	A0A090MZM6	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 20 homolog.	0.573
A0A090L692	A0A090MZQ7	Bardet-Biedl syndrome 5 protein homolog.	Cytoplasmic dynein 2 light intermediate chain 1.	0.534
A0A090L692	A0A090MZW0	Bardet-Biedl syndrome 5 protein homolog.	Intraflagellar transport protein 80 homolog.	0.576