56 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LEU1	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (1262 aa)
	A0A090LEW1	Probable ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (707 aa)
	A0A090LEY5	Microfibrillar-associated protein 1. (435 aa)
	A0A090LFW8	Matrin-type domain-containing protein. (489 aa)
	A0A090LG64	RNA-binding motif protein, X-linked 2. (301 aa)
	A0A090LGT9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	A0A090LH16	HIV Tat-specific factor 1. (400 aa)
	A0A090LHQ1	Uncharacterized protein. (172 aa)
	A0A090LHT8	U5 small nuclear ribonucleoprotein 40 kDa protein. (356 aa)
	A0A090LHU4	Beta-catenin-like protein 1. (547 aa)
	A0A090LHV6	BcDNA.GH04978. (682 aa)
	A0A090LL72	Cactin. (591 aa)
	A0A090LN49	Ubiquitin-conjugating enzyme E2 J1. (208 aa)
	A0A090LPU0	Splicing factor 3A subunit 2. (234 aa)
	A0A090LQ13	Uncharacterized protein. (296 aa)
	A0A090LQC3	ATP-dependent RNA helicase DHX8. (1162 aa)
	A0A090LRB7	WW domain-binding protein 4. (387 aa)
	A0A090MTW1	ATP-dependent RNA helicase DHX8. (832 aa)
	A0A090MUW1	Pre-mRNA-splicing factor 38B. (293 aa)
	A0A090MWE8	Novel protein similar to human splicing factor 3a, subunit 1, 120kD. (647 aa)
	A0A090MXL7	Ring finger protein 113A. (153 aa)
	A0A090MYQ8	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1070 aa)
	A0A090MYR2	U1 small nuclear ribonucleoprotein C. (87 aa)
	A0A090MZ92	Mitogen-activated protein kinase organizer 1. (284 aa)
	A0A090MZA2	Luc7-like protein 3. (316 aa)
	A0A090LDV1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (150 aa)
	A0A090L9L7	Zinc finger RNA-binding protein. (710 aa)
	A0A090LBD2	Pre-mRNA-splicing factor RBM22. (327 aa)
	A0A090LBF5	Tr-type G domain-containing protein. (981 aa)
	A0A090LBL6	Probable ATP-dependent RNA helicase DDX41; Belongs to the DEAD box helicase family. (601 aa)
	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm7. (108 aa)
	A0A090KWQ2	Sulfate_transp domain-containing protein. (281 aa)
	A0A090KWR0	Splicing factor 3B subunit 6-like protein. (136 aa)
	A0A090KX97	Pre-mRNA-splicing factor SYF2. (243 aa)
	A0A090KY87	Tuftelin-interacting protein 11. (585 aa)
	A0A090L0I6	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein. (1379 aa)
	A0A090L157	FI18412p1. (542 aa)
	A0A090L1F5	Splicing factor 3B subunit 2. (506 aa)
	A0A090L1K1	Peptidyl-prolyl cis-trans isomerase CWC27 homolog. (304 aa)
	A0A090L275	FI21236p1. (430 aa)
	A0A090L2U1	annotation not available (324 aa)
	A0A090L354	Similar to Xab2 protein. (794 aa)
	A0A090L5C6	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (521 aa)
	A0A090L5M6	ATP-dependent RNA helicase DHX8. (700 aa)
	A0A090L643	Protein BUD31 homolog. (138 aa)
	A0A090L6I9	Protein crooked neck. (672 aa)
	A0A090L759	Smad nuclear-interacting protein 1. (264 aa)
	A0A090L765	annotation not available (1228 aa)
	A0A090L7X9	mRNA splicing factor, Cwf18 family-containing protein. (148 aa)
	A0A090L8K9	annotation not available (1185 aa)
	A0A090L8M5	CWC16 protein family-containing protein. (258 aa)
	A0A090LBU7	GC-rich sequence DNA-binding factor domain-containing protein. (690 aa)
	A0A090LEK5	Small nuclear ribonucleoprotein G. (77 aa)
	A0A090LCI1	Pre-mRNA 3'-end-processing factor FIP1. (501 aa)
	A0A090LD46	Uncharacterized protein. (350 aa)
	A0A090LDA6	Pre-mRNA-processing factor 17. (565 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KWQ2	A0A090L157	Sulfate_transp domain-containing protein.	FI18412p1.	0.569
A0A090KWR0	A0A090KX97	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-splicing factor SYF2.	0.611
A0A090KWR0	A0A090L0I6	Splicing factor 3B subunit 6-like protein.	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	0.625
A0A090KWR0	A0A090L1F5	Splicing factor 3B subunit 6-like protein.	Splicing factor 3B subunit 2.	0.993
A0A090KWR0	A0A090L1K1	Splicing factor 3B subunit 6-like protein.	Peptidyl-prolyl cis-trans isomerase CWC27 homolog.	0.676
A0A090KWR0	A0A090L275	Splicing factor 3B subunit 6-like protein.	FI21236p1.	0.702
A0A090KWR0	A0A090L2U1	Splicing factor 3B subunit 6-like protein.	annotation not available	0.681
A0A090KWR0	A0A090L354	Splicing factor 3B subunit 6-like protein.	Similar to Xab2 protein.	0.628
A0A090KWR0	A0A090L5C6	Splicing factor 3B subunit 6-like protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.977
A0A090KWR0	A0A090L5M6	Splicing factor 3B subunit 6-like protein.	ATP-dependent RNA helicase DHX8.	0.810
A0A090KWR0	A0A090L643	Splicing factor 3B subunit 6-like protein.	Protein BUD31 homolog.	0.636
A0A090KWR0	A0A090L6I9	Splicing factor 3B subunit 6-like protein.	Protein crooked neck.	0.607
A0A090KWR0	A0A090L759	Splicing factor 3B subunit 6-like protein.	Smad nuclear-interacting protein 1.	0.735
A0A090KWR0	A0A090L765	Splicing factor 3B subunit 6-like protein.	annotation not available	0.999
A0A090KWR0	A0A090LBD2	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-splicing factor RBM22.	0.591
A0A090KWR0	A0A090LBF5	Splicing factor 3B subunit 6-like protein.	Tr-type G domain-containing protein.	0.755
A0A090KWR0	A0A090LBT2	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm7.	0.735
A0A090KWR0	A0A090LDA6	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-processing factor 17.	0.654
A0A090KWR0	A0A090LDV1	Splicing factor 3B subunit 6-like protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.714
A0A090KWR0	A0A090LEK5	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein G.	0.974