7 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm7. (108 aa)
	A0A090L2S2	UPF0692 protein C19orf54. (242 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090MY90	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (81 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm2. (428 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090L2S2	A0A090LBT2	A0A090L2S2	A0A090LBT2	UPF0692 protein C19orf54.	U6 snRNA-associated Sm-like protein LSm7.	0.978
A0A090L2S2	A0A090LJP5	A0A090L2S2	A0A090LJP5	UPF0692 protein C19orf54.	U6 snRNA-associated Sm-like protein LSm2.	0.987
A0A090L2S2	A0A090MY90	A0A090L2S2	A0A090MY90	UPF0692 protein C19orf54.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.981
A0A090L2S2	LSM4	A0A090L2S2	A0A090LG17	UPF0692 protein C19orf54.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
A0A090L2S2	LSM8	A0A090L2S2	A0A090N0A3	UPF0692 protein C19orf54.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.978
A0A090LBT2	A0A090L2S2	A0A090LBT2	A0A090L2S2	U6 snRNA-associated Sm-like protein LSm7.	UPF0692 protein C19orf54.	0.978
A0A090LBT2	A0A090LJP5	A0A090LBT2	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm2.	0.999
A0A090LBT2	A0A090MY90	A0A090LBT2	A0A090MY90	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A090LBT2	LSM3	A0A090LBT2	A0A090LPD9	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.988
A0A090LBT2	LSM4	A0A090LBT2	A0A090LG17	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A090LBT2	LSM8	A0A090LBT2	A0A090N0A3	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A090LJP5	A0A090L2S2	A0A090LJP5	A0A090L2S2	U6 snRNA-associated Sm-like protein LSm2.	UPF0692 protein C19orf54.	0.987
A0A090LJP5	A0A090LBT2	A0A090LJP5	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm2.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A090LJP5	A0A090MY90	A0A090LJP5	A0A090MY90	U6 snRNA-associated Sm-like protein LSm2.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A090LJP5	LSM3	A0A090LJP5	A0A090LPD9	U6 snRNA-associated Sm-like protein LSm2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
A0A090LJP5	LSM4	A0A090LJP5	A0A090LG17	U6 snRNA-associated Sm-like protein LSm2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A090LJP5	LSM8	A0A090LJP5	A0A090N0A3	U6 snRNA-associated Sm-like protein LSm2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A090MY90	A0A090L2S2	A0A090MY90	A0A090L2S2	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	UPF0692 protein C19orf54.	0.981
A0A090MY90	A0A090LBT2	A0A090MY90	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A090MY90	A0A090LJP5	A0A090MY90	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm2.	0.999