43 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090MYK3	Uncharacterized protein; Belongs to the potassium channel family. (560 aa)
	A0A090MY43	CUB domain and Low-density lipoprotein (LDL) receptor class A repeat-containing protein. (580 aa)
	A0A090MXJ3	Uncharacterized protein. (485 aa)
	A0A090MXF4	Cyclic nucleotide-gated olfactory channel. (710 aa)
	A0A090LUZ5	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (537 aa)
	A0A090LUS5	annotation not available (1878 aa)
	A0A090LTJ2	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (655 aa)
	A0A090LQ33	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (364 aa)
	A0A090LP16	Uncharacterized protein; Belongs to the potassium channel family. (456 aa)
	A0A090LNH1	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (413 aa)
	A0A090LN64	Cyclic nucleotide-gated olfactory channel. (669 aa)
	A0A090LMR2	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (370 aa)
	A0A090LMH0	Zinc transporter SLC39A7. (850 aa)
	A0A090LM25	Inwardly rectifying potassium channel 3. (492 aa)
	A0A090LKL4	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (411 aa)
	A0A090LKG3	Uncharacterized protein. (315 aa)
	A0A090LHY0	Calcium channel, voltage-dependent, beta 2b. (584 aa)
	A0A090LHK6	Uncharacterized protein. (328 aa)
	A0A090LGJ4	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (608 aa)
	A0A090LG03	Chloride intracellular channel. (297 aa)
	A0A090LFH4	Protein unc-80 homolog. (479 aa)
	A0A090LE90	Uncharacterized protein. (127 aa)
	A0A090LCN0	Calcium release-activated calcium channel protein 1. (294 aa)
	A0A090LC88	GH11189p. (748 aa)
	A0A090L9Z8	Uncharacterized protein. (164 aa)
	A0A090L9I4	Calcium uptake protein 2, mitochondrial. (462 aa)
	A0A090L8V7	Calcium channel, voltage-dependent, beta 2b. (408 aa)
	A0A090L8T3	Uncharacterized protein. (579 aa)
	A0A090L8B1	Short transient receptor potential channel 5; Belongs to the transient receptor (TC 1.A.4) family. (1153 aa)
	A0A090L7A7	Inwardly rectifying potassium channel 3. (469 aa)
	A0A090L6Q3	CUB domain-containing protein. (669 aa)
	A0A090L634	Uncharacterized protein. (367 aa)
	A0A090L5A1	TPM domain-containing protein. (290 aa)
	A0A090L4L3	annotation not available (1066 aa)
	A0A090L476	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (572 aa)
	A0A090L3K6	Voltage-dependent calcium channel type A subunit alpha-1. (2099 aa)
	A0A090L2Q1	Uncharacterized protein. (139 aa)
	A0A090L2P4	Uncharacterized protein; Belongs to the potassium channel family. (525 aa)
	A0A090L1R8	Uncharacterized protein; Belongs to the potassium channel family. (676 aa)
	A0A090MYS2	annotation not available (802 aa)
	A0A090MZU4	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (409 aa)
	A0A090MZZ8	Potassium voltage-gated channel protein Shaker; Belongs to the potassium channel family. (530 aa)
	A0A090N0T3	PMP-22/EMP/MP20/Claudin superfamily-containing protein. (284 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L1R8	A0A090MZZ8	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel protein Shaker; Belongs to the potassium channel family.	0.477
A0A090L2P4	A0A090MZZ8	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel protein Shaker; Belongs to the potassium channel family.	0.477
A0A090L2Q1	A0A090L9I4	Uncharacterized protein.	Calcium uptake protein 2, mitochondrial.	0.989
A0A090L3K6	A0A090L8V7	Voltage-dependent calcium channel type A subunit alpha-1.	Calcium channel, voltage-dependent, beta 2b.	0.971
A0A090L3K6	A0A090LFH4	Voltage-dependent calcium channel type A subunit alpha-1.	Protein unc-80 homolog.	0.767
A0A090L3K6	A0A090LHK6	Voltage-dependent calcium channel type A subunit alpha-1.	Uncharacterized protein.	0.461
A0A090L3K6	A0A090LHY0	Voltage-dependent calcium channel type A subunit alpha-1.	Calcium channel, voltage-dependent, beta 2b.	0.971
A0A090L3K6	A0A090LUS5	Voltage-dependent calcium channel type A subunit alpha-1.	annotation not available	0.954
A0A090L3K6	A0A090MZZ8	Voltage-dependent calcium channel type A subunit alpha-1.	Potassium voltage-gated channel protein Shaker; Belongs to the potassium channel family.	0.692
A0A090L3K6	A0A090N0T3	Voltage-dependent calcium channel type A subunit alpha-1.	PMP-22/EMP/MP20/Claudin superfamily-containing protein.	0.757
A0A090L4L3	A0A090LN64	annotation not available	Cyclic nucleotide-gated olfactory channel.	0.943
A0A090L4L3	A0A090MXF4	annotation not available	Cyclic nucleotide-gated olfactory channel.	0.944
A0A090L4L3	A0A090MYS2	annotation not available	annotation not available	0.992
A0A090L6Q3	A0A090LC88	CUB domain-containing protein.	GH11189p.	0.517
A0A090L6Q3	A0A090LHK6	CUB domain-containing protein.	Uncharacterized protein.	0.533
A0A090L6Q3	A0A090MY43	CUB domain-containing protein.	CUB domain and Low-density lipoprotein (LDL) receptor class A repeat-containing protein.	0.706
A0A090L8B1	A0A090LUS5	Short transient receptor potential channel 5; Belongs to the transient receptor (TC 1.A.4) family.	annotation not available	0.746
A0A090L8T3	A0A090LKL4	Uncharacterized protein.	GluClalpha; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.475
A0A090L8V7	A0A090L3K6	Calcium channel, voltage-dependent, beta 2b.	Voltage-dependent calcium channel type A subunit alpha-1.	0.971
A0A090L8V7	A0A090LHY0	Calcium channel, voltage-dependent, beta 2b.	Calcium channel, voltage-dependent, beta 2b.	0.414