38 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

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Your Input:
	A0A090L5D1	U2 small nuclear ribonucleoprotein A. (227 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090MZ79	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (191 aa)
	A0A090MY90	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (81 aa)
	A0A090MX77	PRP40 pre-mRNA processing factor 40 homolog A. (731 aa)
	A0A090MWE8	Novel protein similar to human splicing factor 3a, subunit 1, 120kD. (647 aa)
	A0A090LQ13	Uncharacterized protein. (296 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090LK60	PTB/PI domain and Pleckstrin homology-like domain-containing protein. (295 aa)
	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm2. (428 aa)
	A0A090LI89	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A090LHQ1	Uncharacterized protein. (172 aa)
	A0A090LH16	HIV Tat-specific factor 1. (400 aa)
	A0A090LGT9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	A0A090LFU9	Small nuclear ribonucleoprotein-associated protein B. (192 aa)
	A0A090LFG9	Pre-mRNA-processing-splicing factor 8. (2338 aa)
	A0A090LEK5	Small nuclear ribonucleoprotein G. (77 aa)
	A0A090LD46	Uncharacterized protein. (350 aa)
	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm7. (108 aa)
	A0A090LBE4	CD2 antigen cytoplasmic tail-binding protein 2. (274 aa)
	A0A090LB43	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (91 aa)
	A0A090LAL7	U1 small nuclear ribonucleoprotein 70 kDa. (180 aa)
	A0A090LAI6	annotation not available (341 aa)
	A0A090L8I4	PHF5-like family and Gamma-tubulin complex component protein family-containing protein. (931 aa)
	A0A090L7Y9	Zinc finger matrin-type protein 2. (201 aa)
	A0A090L7H7	U4/U6 small nuclear ribonucleoprotein Prp3. (500 aa)
	A0A090L765	annotation not available (1228 aa)
	A0A090L6Y4	U4/U6 small nuclear ribonucleoprotein Prp31. (524 aa)
	A0A090L6G2	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (139 aa)
	A0A090L3E5	Splicing factor 3B subunit 3. (1205 aa)
	A0A090L2S2	UPF0692 protein C19orf54. (242 aa)
	A0A090KZY3	Pre-mRNA-processing factor 6. (929 aa)
	A0A090KZU7	Integrator complex subunit 3. (1112 aa)
	A0A090KZS6	Uncharacterized protein. (640 aa)
	A0A090KX81	U4/U6.U5 tri-snRNP-associated protein 2. (488 aa)
	A0A090KX24	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial. (207 aa)
	A0A090KWR0	Splicing factor 3B subunit 6-like protein. (136 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090KWR0	A0A090KX81	A0A090KWR0	A0A090KX81	Splicing factor 3B subunit 6-like protein.	U4/U6.U5 tri-snRNP-associated protein 2.	0.694
A0A090KWR0	A0A090KZY3	A0A090KWR0	A0A090KZY3	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-processing factor 6.	0.987
A0A090KWR0	A0A090L2S2	A0A090KWR0	A0A090L2S2	Splicing factor 3B subunit 6-like protein.	UPF0692 protein C19orf54.	0.697
A0A090KWR0	A0A090L3E5	A0A090KWR0	A0A090L3E5	Splicing factor 3B subunit 6-like protein.	Splicing factor 3B subunit 3.	0.999
A0A090KWR0	A0A090L5D1	A0A090KWR0	A0A090L5D1	Splicing factor 3B subunit 6-like protein.	U2 small nuclear ribonucleoprotein A.	0.954
A0A090KWR0	A0A090L6G2	A0A090KWR0	A0A090L6G2	Splicing factor 3B subunit 6-like protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.631
A0A090KWR0	A0A090L6Y4	A0A090KWR0	A0A090L6Y4	Splicing factor 3B subunit 6-like protein.	U4/U6 small nuclear ribonucleoprotein Prp31.	0.591
A0A090KWR0	A0A090L765	A0A090KWR0	A0A090L765	Splicing factor 3B subunit 6-like protein.	annotation not available	0.999
A0A090KWR0	A0A090L7H7	A0A090KWR0	A0A090L7H7	Splicing factor 3B subunit 6-like protein.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.591
A0A090KWR0	A0A090L7Y9	A0A090KWR0	A0A090L7Y9	Splicing factor 3B subunit 6-like protein.	Zinc finger matrin-type protein 2.	0.618
A0A090KWR0	A0A090L8I4	A0A090KWR0	A0A090L8I4	Splicing factor 3B subunit 6-like protein.	PHF5-like family and Gamma-tubulin complex component protein family-containing protein.	0.999
A0A090KWR0	A0A090LAI6	A0A090KWR0	A0A090LAI6	Splicing factor 3B subunit 6-like protein.	annotation not available	0.673
A0A090KWR0	A0A090LAL7	A0A090KWR0	A0A090LAL7	Splicing factor 3B subunit 6-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.693
A0A090KWR0	A0A090LB43	A0A090KWR0	A0A090LB43	Splicing factor 3B subunit 6-like protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
A0A090KWR0	A0A090LBT2	A0A090KWR0	A0A090LBT2	Splicing factor 3B subunit 6-like protein.	U6 snRNA-associated Sm-like protein LSm7.	0.735
A0A090KWR0	A0A090LEK5	A0A090KWR0	A0A090LEK5	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein G.	0.974
A0A090KWR0	A0A090LFG9	A0A090KWR0	A0A090LFG9	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-processing-splicing factor 8.	0.873
A0A090KWR0	A0A090LFU9	A0A090KWR0	A0A090LFU9	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein-associated protein B.	0.833
A0A090KWR0	A0A090LGT9	A0A090KWR0	A0A090LGT9	Splicing factor 3B subunit 6-like protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.944
A0A090KWR0	A0A090LH16	A0A090KWR0	A0A090LH16	Splicing factor 3B subunit 6-like protein.	HIV Tat-specific factor 1.	0.776