83 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L7Y7	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (652 aa)
	A0A090N101	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (2872 aa)
	A0A090N0J0	Ataxin-2 binding protein 1. (497 aa)
	A0A090N0I1	annotation not available (432 aa)
	A0A090MZZ4	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (448 aa)
	A0A090MZN6	Diacylglycerol kinase. (1505 aa)
	A0A090MZF7	Hephaestus. (672 aa)
	A0A090MZ38	RNA-binding protein 42. (260 aa)
	A0A090MYW6	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (397 aa)
	A0A090MYQ2	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (148 aa)
	A0A090MY02	Splicing factor U2AF 35 kDa subunit. (234 aa)
	A0A090MXL2	Lupus La protein. (397 aa)
	A0A090MX03	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (207 aa)
	A0A090MWI7	RNA-binding protein fusilli. (226 aa)
	A0A090MVE4	Glorund. (489 aa)
	A0A090MV32	TAR DNA-binding protein 43. (410 aa)
	A0A090LRF3	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (221 aa)
	A0A090LNT1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (665 aa)
	A0A090LNN7	SC35. (238 aa)
	A0A090LMK4	annotation not available (338 aa)
	A0A090LLW5	DnaJ homolog subfamily C member 17. (296 aa)
	A0A090LLH2	Squamous cell carcinoma antigen recognized by T-cells 3. (789 aa)
	A0A090LKJ8	Polyadenylate-binding protein 2. (198 aa)
	A0A090LKA3	Protein sarah. (205 aa)
	A0A090LJ92	SRA stem-loop-interacting RNA-binding protein, mitochondrial. (114 aa)
	A0A090LJ15	Nuclear RNA export factor 2. (624 aa)
	A0A090LIZ6	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (100 aa)
	A0A090LI05	Cleavage stimulation factor 64 kilodalton subunit. (359 aa)
	A0A090LHE8	Histone-lysine N-methyltransferase SETD1. (1054 aa)
	A0A090LHB3	tRNA selenocysteine 1-associated protein 1. (371 aa)
	A0A090LH87	THO complex subunit 4. (251 aa)
	A0A090LH16	HIV Tat-specific factor 1. (400 aa)
	A0A090LGK6	Transformer-2 sex-determining protein. (215 aa)
	A0A090LG64	RNA-binding motif protein, X-linked 2. (301 aa)
	A0A090LFF6	RNA-binding protein 39. (498 aa)
	A0A090LFB7	annotation not available (598 aa)
	A0A090LF07	Protein alan shepard. (556 aa)
	A0A090LEV7	Eukaryotic translation initiation factor 4H. (224 aa)
	A0A090LEM9	Activator of basal transcription 1. (258 aa)
	A0A090LE40	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (515 aa)
	A0A090LE15	Zinc finger, RanBP2-type domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (535 aa)
	A0A090LDD0	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (331 aa)
	A0A090LD19	Serine/arginine-rich splicing factor 1. (295 aa)
	A0A090LD17	Nucleotide-binding, alpha-beta plait domain-containing protein. (132 aa)
	A0A090LD06	RNA-binding protein Musashi homolog Rbp6. (430 aa)
	A0A090LCU1	Transformer-2 sex-determining protein. (234 aa)
	A0A090LCQ3	Cleavage stimulation factor 64 kilodalton subunit. (95 aa)
	A0A090LBZ4	MKI67 FHA domain-interacting nucleolar phosphoprotein. (221 aa)
	A0A090LBD2	Pre-mRNA-splicing factor RBM22. (327 aa)
	A0A090LB69	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (197 aa)
	A0A090LB46	annotation not available (679 aa)
	A0A090LAM0	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (206 aa)
	A0A090LAL7	U1 small nuclear ribonucleoprotein 70 kDa. (180 aa)
	A0A090LAI6	annotation not available (341 aa)
	A0A090LAC3	Uncharacterized protein. (363 aa)
	A0A090LA46	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (634 aa)
	A0A090L9P7	Poly(U)-binding-splicing factor PUF60. (657 aa)
	A0A090L9N9	RNA-binding protein with serine-rich domain 1. (248 aa)
	A0A090L9F6	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (266 aa)
	A0A090L974	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (272 aa)
	A0A090L879	LD29830p. (351 aa)
	A0A090L861	Serine/arginine-rich splicing factor 3. (166 aa)
	A0A090L741	RNA-binding protein 28. (549 aa)
	A0A090L6W8	Transformer-2 sex-determining protein. (279 aa)
	A0A090L672	RNA-binding protein 25. (606 aa)
	A0A090L5P9	CCR4-NOT transcription complex subunit 4. (661 aa)
	A0A090L5D4	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein. (324 aa)
	A0A090L5C6	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (521 aa)
	A0A090L4V3	Second mitotic wave missing. (688 aa)
	A0A090L4I7	BcDNA.GH11110. (631 aa)
	A0A090L405	Bruno-3. (666 aa)
	A0A090L3M5	annotation not available (464 aa)
	A0A090L2U1	annotation not available (324 aa)
	A0A090L275	FI21236p1. (430 aa)
	A0A090L212	RNA-recognition motif (RRM) Nup35-type domain-containing protein. (258 aa)
	A0A090L155	annotation not available (381 aa)
	A0A090L140	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure. (164 aa)
	A0A090L0E5	Cleavage and polyadenylation specificity factor subunit CG7185. (384 aa)
	A0A090KZX9	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial. (1231 aa)
	A0A090KZR2	annotation not available (619 aa)
	A0A090KYI2	RNA-binding protein 34. (319 aa)
	A0A090KX26	FI03683p. (681 aa)
	A0A090KWR0	Splicing factor 3B subunit 6-like protein. (136 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KWR0	A0A090KYI2	Splicing factor 3B subunit 6-like protein.	RNA-binding protein 34.	0.605
A0A090KWR0	A0A090KZR2	Splicing factor 3B subunit 6-like protein.	annotation not available	0.687
A0A090KWR0	A0A090L140	Splicing factor 3B subunit 6-like protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.712
A0A090KWR0	A0A090L275	Splicing factor 3B subunit 6-like protein.	FI21236p1.	0.702
A0A090KWR0	A0A090L2U1	Splicing factor 3B subunit 6-like protein.	annotation not available	0.681
A0A090KWR0	A0A090L5C6	Splicing factor 3B subunit 6-like protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.977
A0A090KWR0	A0A090L6W8	Splicing factor 3B subunit 6-like protein.	Transformer-2 sex-determining protein.	0.643
A0A090KWR0	A0A090L7Y7	Splicing factor 3B subunit 6-like protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.627
A0A090KWR0	A0A090L861	Splicing factor 3B subunit 6-like protein.	Serine/arginine-rich splicing factor 3.	0.455
A0A090KWR0	A0A090L974	Splicing factor 3B subunit 6-like protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.605
A0A090KWR0	A0A090L9P7	Splicing factor 3B subunit 6-like protein.	Poly(U)-binding-splicing factor PUF60.	0.705
A0A090KWR0	A0A090LAI6	Splicing factor 3B subunit 6-like protein.	annotation not available	0.673
A0A090KWR0	A0A090LAL7	Splicing factor 3B subunit 6-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.693
A0A090KWR0	A0A090LAM0	Splicing factor 3B subunit 6-like protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.405
A0A090KWR0	A0A090LB69	Splicing factor 3B subunit 6-like protein.	RNA recognition motif domain and Nucleotide-binding, alpha-beta plait domain-containing protein.	0.605
A0A090KWR0	A0A090LBD2	Splicing factor 3B subunit 6-like protein.	Pre-mRNA-splicing factor RBM22.	0.591
A0A090KWR0	A0A090LCQ3	Splicing factor 3B subunit 6-like protein.	Cleavage stimulation factor 64 kilodalton subunit.	0.655
A0A090KWR0	A0A090LCU1	Splicing factor 3B subunit 6-like protein.	Transformer-2 sex-determining protein.	0.626
A0A090KWR0	A0A090LD19	Splicing factor 3B subunit 6-like protein.	Serine/arginine-rich splicing factor 1.	0.895
A0A090KWR0	A0A090LDD0	Splicing factor 3B subunit 6-like protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.635