14 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090MZ64	Protein kinase-like domain-containing protein. (417 aa)
	A0A090L8P6	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (199 aa)
	A0A090L908	Lipin, N-terminal domain and LNS2, Lipin/Ned1/Smp2 domain and HAD-like domain-containing protein. (941 aa)
	A0A090L940	annotation not available (177 aa)
	A0A090LB36	Alpha/beta hydrolase2. (602 aa)
	A0A090LF24	CTL-like protein 2; Belongs to the CTL (choline transporter-like) family. (714 aa)
	A0A090LJL1	Acetylcholinesterase. (563 aa)
	A0A090LK01	annotation not available (356 aa)
	A0A090LKC1	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily. (347 aa)
	A0A090LNK2	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (435 aa)
	A0A090LR00	Uncharacterized protein. (538 aa)
	A0A090LRM7	Maternal protein pumilio. (819 aa)
	A0A090MVV2	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (221 aa)
	A0A090N0R3	annotation not available (178 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L8P6	A0A090LKC1	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily.	0.983
A0A090L8P6	A0A090MVV2	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.411
A0A090L908	A0A090LNK2	Lipin, N-terminal domain and LNS2, Lipin/Ned1/Smp2 domain and HAD-like domain-containing protein.	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.899
A0A090L908	A0A090MZ64	Lipin, N-terminal domain and LNS2, Lipin/Ned1/Smp2 domain and HAD-like domain-containing protein.	Protein kinase-like domain-containing protein.	0.655
A0A090L940	A0A090LK01	annotation not available	annotation not available	0.571
A0A090L940	A0A090LNK2	annotation not available	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.769
A0A090L940	A0A090MZ64	annotation not available	Protein kinase-like domain-containing protein.	0.797
A0A090LK01	A0A090L940	annotation not available	annotation not available	0.571
A0A090LK01	A0A090LNK2	annotation not available	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.822
A0A090LK01	A0A090MZ64	annotation not available	Protein kinase-like domain-containing protein.	0.797
A0A090LK01	A0A090N0R3	annotation not available	annotation not available	0.570
A0A090LKC1	A0A090L8P6	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.983
A0A090LKC1	A0A090MVV2	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.983
A0A090LNK2	A0A090L908	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Lipin, N-terminal domain and LNS2, Lipin/Ned1/Smp2 domain and HAD-like domain-containing protein.	0.899
A0A090LNK2	A0A090L940	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	annotation not available	0.769
A0A090LNK2	A0A090LK01	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	annotation not available	0.822
A0A090LNK2	A0A090MZ64	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Protein kinase-like domain-containing protein.	0.607
A0A090LNK2	A0A090N0R3	Bb in a boxcar; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	annotation not available	0.769
A0A090MVV2	A0A090L8P6	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.411
A0A090MVV2	A0A090LKC1	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily.	0.983