24 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LAG1	Protein AATF. (480 aa)
	A0A090L936	Gamma-secretase subunit Aph-1 family-containing protein. (234 aa)
	A0A090L6A1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (417 aa)
	A0A090L565	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit family-containing protein. (135 aa)
	A0A090KYT7	Son of sevenless homolog 1. (1522 aa)
	A0A090KZL1	Rho-type guanine nucleotide exchange factor. (667 aa)
	A0A090L280	T-lymphoma invasion and metastasis-inducing protein 1. (1060 aa)
	A0A090L452	Nicastrin family-containing protein. (708 aa)
	A0A090L558	Gamma-secretase subunit Aph-1 family-containing protein. (201 aa)
	A0A090MWY5	Kalirin. (1671 aa)
	A0A090LS36	ShKT domain-containing protein. (237 aa)
	A0A090MWD3	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (395 aa)
	A0A090LP70	Uncharacterized protein. (845 aa)
	A0A090LM54	Protein vav. (968 aa)
	A0A090LKS8	Polyubiquitin-C. (610 aa)
	A0A090LKP9	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A090LJJ1	Ubiquitin-60S ribosomal protein L40. (116 aa)
	A0A090LIS4	Rho guanine nucleotide exchange factor 17. (1349 aa)
	A0A090LHT4	annotation not available (1451 aa)
	A0A090LH49	Protein ECT2. (835 aa)
	A0A090LF31	Rho guanine nucleotide exchange factor 25. (684 aa)
	A0A090MXD6	Presenilin homolog. (440 aa)
	A0A090MX75	Peptidase A22A, presenilin family-containing protein. (354 aa)
	A0A090LC01	Ubiquitin-40S ribosomal protein S27a. (164 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KYT7	A0A090KZL1	Son of sevenless homolog 1.	Rho-type guanine nucleotide exchange factor.	0.491
A0A090KYT7	A0A090L280	Son of sevenless homolog 1.	T-lymphoma invasion and metastasis-inducing protein 1.	0.612
A0A090KYT7	A0A090LH49	Son of sevenless homolog 1.	Protein ECT2.	0.449
A0A090KYT7	A0A090LIS4	Son of sevenless homolog 1.	Rho guanine nucleotide exchange factor 17.	0.501
A0A090KYT7	A0A090LM54	Son of sevenless homolog 1.	Protein vav.	0.759
A0A090KZL1	A0A090KYT7	Rho-type guanine nucleotide exchange factor.	Son of sevenless homolog 1.	0.491
A0A090KZL1	A0A090L280	Rho-type guanine nucleotide exchange factor.	T-lymphoma invasion and metastasis-inducing protein 1.	0.512
A0A090KZL1	A0A090LF31	Rho-type guanine nucleotide exchange factor.	Rho guanine nucleotide exchange factor 25.	0.454
A0A090KZL1	A0A090LH49	Rho-type guanine nucleotide exchange factor.	Protein ECT2.	0.706
A0A090KZL1	A0A090LIS4	Rho-type guanine nucleotide exchange factor.	Rho guanine nucleotide exchange factor 17.	0.525
A0A090KZL1	A0A090LM54	Rho-type guanine nucleotide exchange factor.	Protein vav.	0.565
A0A090KZL1	A0A090LP70	Rho-type guanine nucleotide exchange factor.	Uncharacterized protein.	0.494
A0A090KZL1	A0A090MWY5	Rho-type guanine nucleotide exchange factor.	Kalirin.	0.454
A0A090L280	A0A090KYT7	T-lymphoma invasion and metastasis-inducing protein 1.	Son of sevenless homolog 1.	0.612
A0A090L280	A0A090KZL1	T-lymphoma invasion and metastasis-inducing protein 1.	Rho-type guanine nucleotide exchange factor.	0.512
A0A090L280	A0A090LF31	T-lymphoma invasion and metastasis-inducing protein 1.	Rho guanine nucleotide exchange factor 25.	0.585
A0A090L280	A0A090LH49	T-lymphoma invasion and metastasis-inducing protein 1.	Protein ECT2.	0.505
A0A090L280	A0A090LIS4	T-lymphoma invasion and metastasis-inducing protein 1.	Rho guanine nucleotide exchange factor 17.	0.512
A0A090L280	A0A090LM54	T-lymphoma invasion and metastasis-inducing protein 1.	Protein vav.	0.865
A0A090L280	A0A090LP70	T-lymphoma invasion and metastasis-inducing protein 1.	Uncharacterized protein.	0.506