15 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LP18	Transcription factor Dp. (416 aa)
	A0A090LQ83	Mothers against decapentaplegic homolog. (552 aa)
	A0A090LS36	ShKT domain-containing protein. (237 aa)
	A0A090LJJ1	Ubiquitin-60S ribosomal protein L40. (116 aa)
	A0A090LCE8	Smrter. (1784 aa)
	A0A090LC01	Ubiquitin-40S ribosomal protein S27a. (164 aa)
	A0A090LDD3	Mothers against decapentaplegic homolog. (674 aa)
	A0A090LDF5	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (444 aa)
	A0A090LDP9	Homeobox domain and Homeobox KN domain and Homeodomain-like-containing protein. (465 aa)
	A0A090LHR6	Cyclin-T; Belongs to the cyclin family. (305 aa)
	A0A090LKP9	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A090LKS8	Polyubiquitin-C. (610 aa)
	A0A090LLP4	Cyclin-C; Belongs to the cyclin family. (304 aa)
	A0A090L684	Cyclin-K; Belongs to the cyclin family. (250 aa)
	A0A090KZS2	Cyclin-dependent kinase 19. (604 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KZS2	A0A090L684	Cyclin-dependent kinase 19.	Cyclin-K; Belongs to the cyclin family.	0.838
A0A090KZS2	A0A090LDD3	Cyclin-dependent kinase 19.	Mothers against decapentaplegic homolog.	0.656
A0A090KZS2	A0A090LDF5	Cyclin-dependent kinase 19.	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.758
A0A090KZS2	A0A090LHR6	Cyclin-dependent kinase 19.	Cyclin-T; Belongs to the cyclin family.	0.764
A0A090KZS2	A0A090LLP4	Cyclin-dependent kinase 19.	Cyclin-C; Belongs to the cyclin family.	0.999
A0A090KZS2	A0A090LQ83	Cyclin-dependent kinase 19.	Mothers against decapentaplegic homolog.	0.656
A0A090L684	A0A090KZS2	Cyclin-K; Belongs to the cyclin family.	Cyclin-dependent kinase 19.	0.838
A0A090L684	A0A090LDD3	Cyclin-K; Belongs to the cyclin family.	Mothers against decapentaplegic homolog.	0.614
A0A090L684	A0A090LDF5	Cyclin-K; Belongs to the cyclin family.	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.984
A0A090L684	A0A090LHR6	Cyclin-K; Belongs to the cyclin family.	Cyclin-T; Belongs to the cyclin family.	0.845
A0A090L684	A0A090LLP4	Cyclin-K; Belongs to the cyclin family.	Cyclin-C; Belongs to the cyclin family.	0.809
A0A090L684	A0A090LQ83	Cyclin-K; Belongs to the cyclin family.	Mothers against decapentaplegic homolog.	0.614
A0A090LC01	A0A090LCE8	Ubiquitin-40S ribosomal protein S27a.	Smrter.	0.669
A0A090LC01	A0A090LDD3	Ubiquitin-40S ribosomal protein S27a.	Mothers against decapentaplegic homolog.	0.638
A0A090LC01	A0A090LJJ1	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40.	0.984
A0A090LC01	A0A090LKP9	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40.	0.984
A0A090LC01	A0A090LKS8	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin-C.	0.998
A0A090LC01	A0A090LQ83	Ubiquitin-40S ribosomal protein S27a.	Mothers against decapentaplegic homolog.	0.638
A0A090LC01	A0A090LS36	Ubiquitin-40S ribosomal protein S27a.	ShKT domain-containing protein.	0.983
A0A090LCE8	A0A090LC01	Smrter.	Ubiquitin-40S ribosomal protein S27a.	0.669