41 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090MYV2	Nuclear pore complex protein Nup205. (1362 aa)
	A0A090MY65	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (587 aa)
	A0A090MY37	BAG domain-containing protein. (228 aa)
	A0A090MWY8	Nucleoporin Nup88 family-containing protein. (656 aa)
	A0A090MWX2	Uncharacterized protein. (365 aa)
	A0A090MUE1	Protein Hikeshi. (238 aa)
	A0A090LS09	DnaJ homolog subfamily C member 2. (523 aa)
	A0A090LN55	Belongs to the protein kinase superfamily. (444 aa)
	A0A090LN44	Glycogen synthase kinase 3 alpha. (408 aa)
	A0A090LJS4	Nuclear pore protein. (699 aa)
	A0A090KWZ6	annotation not available (269 aa)
	A0A090KYC8	Nuclear pore complex protein Nup214. (1340 aa)
	A0A090L0R1	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (660 aa)
	A0A090L0Z5	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (315 aa)
	A0A090LFC1	Nuclear pore glycoprotein p62. (760 aa)
	A0A090LFL8	Pleckstrin homology-like domain-containing protein. (404 aa)
	A0A090LG21	annotation not available (455 aa)
	A0A090LG40	Nuclear pore complex protein Nup155. (1337 aa)
	A0A090LGM2	Mrj. (250 aa)
	A0A090LIM0	Heat shock protein 4. (787 aa)
	A0A090LI30	Nuclear pore complex protein Nup153. (918 aa)
	A0A090LHU6	Nucleoporin protein Ndc1-Nup family-containing protein. (576 aa)
	A0A090LGN8	Nucleoporin Nup120/160 family-containing protein. (1241 aa)
	A0A090L1F1	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (662 aa)
	A0A090L1N1	annotation not available (375 aa)
	A0A090L212	RNA-recognition motif (RRM) Nup35-type domain-containing protein. (258 aa)
	A0A090N0D1	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family. (656 aa)
	A0A090L2I8	annotation not available (1568 aa)
	A0A090L3Q5	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (669 aa)
	A0A090L6A5	Cyclin-dependent kinase 5. (1386 aa)
	A0A090L7L7	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family. (644 aa)
	A0A090L873	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (431 aa)
	A0A090L8B6	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily. (388 aa)
	A0A090L8R7	Nucleoporin FG repeat-containing protein. (478 aa)
	A0A090L918	Nucleoporin p54. (458 aa)
	A0A090L9N0	annotation not available (906 aa)
	A0A090LBI8	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (759 aa)
	A0A090LBX8	mRNA export factor. (365 aa)
	A0A090MZN0	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (315 aa)
	A0A090MYX3	Replication protein A 70 kDa DNA-binding subunit. (609 aa)
	A0A090N0E0	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (385 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KWZ6	A0A090L0R1	annotation not available	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.733
A0A090KWZ6	A0A090L0Z5	annotation not available	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.609
A0A090KWZ6	A0A090L1F1	annotation not available	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.733
A0A090KWZ6	A0A090L3Q5	annotation not available	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.733
A0A090KWZ6	A0A090L6A5	annotation not available	Cyclin-dependent kinase 5.	0.609
A0A090KWZ6	A0A090L7L7	annotation not available	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family.	0.791
A0A090KWZ6	A0A090L873	annotation not available	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.609
A0A090KWZ6	A0A090L8B6	annotation not available	Glycogen synthase kinase 3 alpha; Belongs to the protein kinase superfamily.	0.609
A0A090KWZ6	A0A090LGM2	annotation not available	Mrj.	0.665
A0A090KWZ6	A0A090LIM0	annotation not available	Heat shock protein 4.	0.745
A0A090KWZ6	A0A090LN44	annotation not available	Glycogen synthase kinase 3 alpha.	0.609
A0A090KWZ6	A0A090LN55	annotation not available	Belongs to the protein kinase superfamily.	0.609
A0A090KWZ6	A0A090MYX3	annotation not available	Replication protein A 70 kDa DNA-binding subunit.	0.601
A0A090KWZ6	A0A090N0D1	annotation not available	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family.	0.777
A0A090KYC8	A0A090L0R1	Nuclear pore complex protein Nup214.	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.611
A0A090KYC8	A0A090L1F1	Nuclear pore complex protein Nup214.	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.611
A0A090KYC8	A0A090L212	Nuclear pore complex protein Nup214.	RNA-recognition motif (RRM) Nup35-type domain-containing protein.	0.970
A0A090KYC8	A0A090L2I8	Nuclear pore complex protein Nup214.	annotation not available	0.967
A0A090KYC8	A0A090L3Q5	Nuclear pore complex protein Nup214.	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.611
A0A090KYC8	A0A090L7L7	Nuclear pore complex protein Nup214.	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family.	0.677